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  5. Seita.5G422200.1

Seita.5G422200.1


Description : HD2-type histone deacetylase *(HD2/HDT)


Gene families : OG_42_0001839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001839_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G422200.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
A4A49_64689 No alias histone deacetylase hdt1 0.05 Orthogroups_2024-Update
At2g27840 No alias Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3] 0.13 Orthogroups_2024-Update
At3g44750 No alias Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6] 0.09 Orthogroups_2024-Update
At5g22650 No alias Histone deacetylase HDT2 [Source:UniProtKB/Swiss-Prot;Acc:Q56WH4] 0.04 Orthogroups_2024-Update
Bradi2g14120 No alias histone deacetylase 2B 0.06 Orthogroups_2024-Update
Brara.B00987.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.08 Orthogroups_2024-Update
Brara.C01007.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.04 Orthogroups_2024-Update
Brara.D01665.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.08 Orthogroups_2024-Update
Brara.J01458.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.03 Orthogroups_2024-Update
GRMZM2G100146 No alias histone deacetylase 3 0.04 Orthogroups_2024-Update
Glyma.11G189500 No alias histone deacetylase 2B 0.03 Orthogroups_2024-Update
Glyma.12G181400 No alias histone deacetylase 2C 0.07 Orthogroups_2024-Update
Glyma.13G319500 No alias histone deacetylase 2C 0.06 Orthogroups_2024-Update
Kfl00300_0030 kfl00300_0030_v1.1 no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_601245g0010 No alias (original description: no original description) 0.06 Orthogroups_2024-Update
Mp5g10240.1 No alias histone deacetylase (HDT/HD2) 0.04 Orthogroups_2024-Update
Potri.004G188800 No alias histone deacetylase 2C 0.06 Orthogroups_2024-Update
Potri.009G149400 No alias histone deacetylase 3 0.03 Orthogroups_2024-Update
Pp1s7_389V6 No alias histone deacetylase 0.07 Orthogroups_2024-Update
Sobic.003G396600.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.14 Orthogroups_2024-Update
Sobic.009G211700.1 No alias HD2-type histone deacetylase *(HD2/HDT) 0.06 Orthogroups_2024-Update
Solyc09g009030 No alias Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH) 0.11 Orthogroups_2024-Update
Solyc10g085560 No alias Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH) 0.03 Orthogroups_2024-Update
Solyc11g066840 No alias Histone deacetylase-like protein-like (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen11g026550 No alias hypothetical protein 0.04 Orthogroups_2024-Update
evm.model.tig00000388.65 No alias (at4g25340 : 88.6) Encodes a member of the FKBP-type... 0.07 Orthogroups_2024-Update
evm.model.tig00000983.33 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!