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  5. Seita.5G427300.1

Seita.5G427300.1


Description : RNA editing factor *(ORRM3)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G427300.1
Cluster HCAA Clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
140819 No alias glycine-rich RNA-binding protein 4 0.05 Orthogroups_2024-Update
81392 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
A4A49_62682 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
At1g74230 No alias Glycine-rich RNA-binding protein 5, mitochondrial... 0.03 Orthogroups_2024-Update
At2g21660 No alias Glycine-rich RNA-binding protein 7... 0.04 Orthogroups_2024-Update
At3g23830 No alias GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] 0.04 Orthogroups_2024-Update
At3g26420 No alias Glycine-rich RNA-binding protein RZ1A... 0.04 Orthogroups_2024-Update
At4g13850 No alias Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 Orthogroups_2024-Update
At5g54580 No alias Organelle RRM domain-containing protein 2, mitochondrial... 0.04 Orthogroups_2024-Update
At5g61030 No alias GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5] 0.04 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi4g06840 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
Brara.B02117.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Brara.B03236.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C04224.1 No alias RNA editing factor *(ORRM3) 0.07 Orthogroups_2024-Update
Brara.E01401.1 No alias RNA editing factor *(ORRM3) 0.06 Orthogroups_2024-Update
Brara.H00482.1 No alias RNA editing factor *(ORRM3) 0.05 Orthogroups_2024-Update
Brara.I00645.1 No alias RNA editing factor *(ORRM3) 0.07 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.06 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
GRMZM2G009448 No alias glycine-rich RNA-binding protein 3 0.02 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
GRMZM2G113513 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
GRMZM2G131167 No alias glycine-rich RNA-binding protein 3 0.04 Orthogroups_2024-Update
GRMZM2G165901 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Glyma.03G172300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.04 Orthogroups_2024-Update
Glyma.05G020900 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.05 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.05 Orthogroups_2024-Update
Glyma.17G078400 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.19G173200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G093400.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
HORVU3Hr1G094330.1 No alias RNA editing factor *(ORRM3) 0.03 Orthogroups_2024-Update
HORVU4Hr1G003990.3 No alias RNA chaperone *(RZ1) 0.02 Orthogroups_2024-Update
HORVU4Hr1G059000.3 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G089190.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G118010.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00090_0320 kfl00090_0320_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
Kfl00609_0010 kfl00609_0010_v1.... (p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding... 0.03 Orthogroups_2024-Update
LOC_Os07g36490 No alias RNA recognition motif containing protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g17454 No alias RNA recognition motif containing protein, expressed 0.04 Orthogroups_2024-Update
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Potri.001G319800 No alias glycine-rich RNA-binding protein 2 0.06 Orthogroups_2024-Update
Potri.001G409800 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Pp1s118_101V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Pp1s123_58V6 No alias glycine-rich rna-binding protein 2 0.02 Orthogroups_2024-Update
Pp1s136_70V6 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
Pp1s143_11V6 No alias glycine-rich rna-binding 0.03 Orthogroups_2024-Update
Pp1s45_280V6 No alias glycine-rich rna-binding 0.03 Orthogroups_2024-Update
Sobic.001G141300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G366800.1 No alias RNA editing factor *(ORRM3) 0.1 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.09 Orthogroups_2024-Update
Sobic.007G034400.1 No alias RNA editing factor *(ORRM2) 0.03 Orthogroups_2024-Update
Sobic.008G103900.1 No alias RNA editing factor *(ORRM3) 0.06 Orthogroups_2024-Update
Solyc02g088790 No alias RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) 0.05 Orthogroups_2024-Update
Solyc05g053780 No alias RNA binding protein-like protein (AHRD V3.3 *** Q3HVL3_SOLTU) 0.03 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.06 Orthogroups_2024-Update
Solyc10g083240 No alias RNA binding protein, putative (AHRD V3.3 *** B9SX10_RICCO) 0.02 Orthogroups_2024-Update
Solyc10g084630 No alias RNA-binding family protein (AHRD V3.3 *** A0A061ET74_THECC) 0.03 Orthogroups_2024-Update
Sopen01g051850 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen02g016120 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.05 Orthogroups_2024-Update
Sopen02g033510 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
Sopen05g032250 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.04 Orthogroups_2024-Update
Sopen09g035220 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.05 Orthogroups_2024-Update
Sopen10g023080 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen10g032720 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update
Sopen10g034070 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 39 108
No external refs found!