Seita.5G438100.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.5G438100.1
Cluster	HCAA Clusters: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
A4A49_17259	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
A4A49_30370	No alias	auxin response factor 11	0.03	Orthogroups_2024-Update
At1g19220	No alias	Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]	0.04	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.03	Orthogroups_2024-Update
At2g33860	No alias	Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]	0.02	Orthogroups_2024-Update
Bradi2g16610	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Bradi5g10950	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Bradi5g25767	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Brara.A02353.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I04264.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.J01551.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
GRMZM2G086949	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.04G200600	No alias	auxin response factor 2	0.04	Orthogroups_2024-Update
Glyma.08G027800	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.11G145500	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.04	Orthogroups_2024-Update
Glyma.14G208500	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Glyma.18G119700	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Glyma.19G181900	No alias	auxin response factor 16	0.04	Orthogroups_2024-Update
HORVU2Hr1G125740.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU3Hr1G072340.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
HORVU6Hr1G058890.2	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os02g04810	No alias	auxin response factor 5, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os06g09660	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g08540	No alias	auxin response factor 20, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
MA_40335g0010	No alias	(at5g62000 : 752.0) Encodes an auxin response factor....	0.02	Orthogroups_2024-Update
Potri.004G078200	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
Potri.006G138500	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Pp1s119_32V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.4G257800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.003G003800.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
Solyc08g082630	No alias	Auxin Response Factor 9A	0.02	Orthogroups_2024-Update
Solyc11g013470	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen01g039790	No alias	AUX/IAA family	0.03	Orthogroups_2024-Update
Sopen01g045470	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen02g011920	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen08g004260	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003872	6-phosphofructokinase activity	IEP	Predicted GO
MF	GO:0004363	glutathione synthase activity	IEP	Predicted GO
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predicted GO
BP	GO:0006749	glutathione metabolic process	IEP	Predicted GO
BP	GO:0006750	glutathione biosynthetic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
MF	GO:0008373	sialyltransferase activity	IEP	Predicted GO
MF	GO:0008443	phosphofructokinase activity	IEP	Predicted GO
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0016571	histone methylation	IEP	Predicted GO
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predicted GO
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Predicted GO
MF	GO:0019200	carbohydrate kinase activity	IEP	Predicted GO
MF	GO:0019842	vitamin binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predicted GO
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034968	histone lysine methylation	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0042054	histone methyltransferase activity	IEP	Predicted GO
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0043130	ubiquitin binding	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0051188	cofactor biosynthetic process	IEP	Predicted GO
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predicted GO
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901681	sulfur compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	742	782
IPR033389	AUX/IAA_dom	680	733
IPR010525	Auxin_resp	255	336
IPR003340	B3_DNA-bd	129	230

External Links

No external refs found!

Seita.5G438100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation