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  5. Seita.5G470000.1

Seita.5G470000.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G470000.1
Cluster HCAA Clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
At4g25960 No alias ABC transporter B family member 2... 0.03 Orthogroups_2024-Update
Brara.A01591.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.I00320.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.J00114.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G085111 No alias P-glycoprotein 21 0.05 Orthogroups_2024-Update
GRMZM2G119894 No alias P-glycoprotein 21 0.04 Orthogroups_2024-Update
Glyma.12G135300 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.17G041300 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
HORVU3Hr1G065280.5 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
HORVU3Hr1G117180.29 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
PSME_00023028-RA No alias (at3g28345 : 1461.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
PSME_00034484-RA No alias (at2g47000 : 865.0) Multidrug resistance P-glycoprotein... 0.02 Orthogroups_2024-Update
PSME_00035518-RA No alias (at2g39480 : 1505.0) P-glycoprotein 6 (PGP6); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00037733-RA No alias (at3g28345 : 1445.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Pp1s30_122V6 No alias multidrug pheromone mdr abc transporter family 0.01 Orthogroups_2024-Update
Solyc07g064120 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.02 Orthogroups_2024-Update
Sopen02g032590 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1168 1316
IPR003439 ABC_transporter-like 427 571
IPR011527 ABC1_TM_dom 90 356
IPR011527 ABC1_TM_dom 839 1095
No external refs found!