1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.6G045700.1

Seita.6G045700.1


Description : mCSF mitochondrial RNA splicing factor


Gene families : OG_42_0001286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G045700.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi3g15650 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.07 Orthogroups_2024-Update
Pp1s184_86V6 No alias crs2-associated factor 1 precursor 0.03 Orthogroups_2024-Update
Solyc11g066300 No alias CRS2-associated factor 1 (AHRD V3.3 *** A0A072TTL7_MEDTR) 0.05 Orthogroups_2024-Update
Sopen05g015000 No alias CRS1 / YhbY (CRM) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006480 N-terminal protein amino acid methylation IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0031365 N-terminal protein amino acid modification IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 166 250
IPR001890 RNA-binding_CRM 285 368
No external refs found!