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  5. Seita.6G055700.1

Seita.6G055700.1


Description : circadian clock core oscillator protein *(LHY/CCA1) & transcription factor *(REVEILLE)


Gene families : OG_42_0008557 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008557_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G055700.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_29102 No alias protein lhy 0.08 Orthogroups_2024-Update
At1g01060 No alias LHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761] 0.05 Orthogroups_2024-Update
Bradi3g16515 No alias Homeodomain-like superfamily protein 0.09 Orthogroups_2024-Update
Brara.H03122.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.04 Orthogroups_2024-Update
GRMZM2G474769 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.03G261800 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G048500 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G017400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G260900 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU7Hr1G070870.4 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.06 Orthogroups_2024-Update
Potri.002G180800 No alias Homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.014G106800 No alias Homeodomain-like superfamily protein 0.07 Orthogroups_2024-Update
Sobic.007G047400.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.12 Orthogroups_2024-Update
Solyc10g005080 No alias Late elongated hypocotyl (AHRD V3.3 *** J9PV71_NICAT) 0.06 Orthogroups_2024-Update
Sopen10g001100 No alias Myb-like DNA-binding domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 51 94
No external refs found!