Description : component *(NOT4) of mRNA deadenylation CCR4-NOT complex
Gene families : OG_42_0002171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002171_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Setaria italica: Seita.6G218200.1 | |
Cluster | HCAA Clusters: Cluster_60 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At2g28540 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein... | 0.04 | Orthogroups_2024-Update | |
At3g45630 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein... | 0.03 | Orthogroups_2024-Update | |
Bradi4g45240 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.11G150034 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.02 | Orthogroups_2024-Update | |
Glyma.12G073200 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.13G329600 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G044500 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.04 | Orthogroups_2024-Update | |
Potri.006G132300 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Potri.009G026200 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Sopen06g001180 | No alias | RING/Ubox like zinc-binding domain | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00001065.17 | No alias | (at5g60170 : 186.0) RNA binding (RRM/RBD/RNP motifs)... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006497 | protein lipidation | IEP | Predicted GO |
BP | GO:0006505 | GPI anchor metabolic process | IEP | Predicted GO |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Predicted GO |
BP | GO:0006643 | membrane lipid metabolic process | IEP | Predicted GO |
BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Predicted GO |
BP | GO:0006664 | glycolipid metabolic process | IEP | Predicted GO |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predicted GO |
BP | GO:0009247 | glycolipid biosynthetic process | IEP | Predicted GO |
BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
CC | GO:0016459 | myosin complex | IEP | Predicted GO |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Predicted GO |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Predicted GO |
BP | GO:0051169 | nuclear transport | IEP | Predicted GO |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
BP | GO:1903509 | liposaccharide metabolic process | IEP | Predicted GO |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |