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  5. Seita.7G277600.1

Seita.7G277600.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G277600.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Bradi1g00491 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g21907 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g27440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Orthogroups_2024-Update
Bradi4g22520 No alias mitochondrial editing factor 22 0.04 Orthogroups_2024-Update
Brara.H02506.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G096602 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.03G227900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G244300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G230100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G062300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G023470.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU3Hr1G058590.1 No alias RNA editing factor *(MEF1) 0.04 Orthogroups_2024-Update
HORVU4Hr1G016720.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G064880.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os11g45410 No alias expressed protein 0.03 Orthogroups_2024-Update
MA_205762g0010 No alias (at4g02750 : 416.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.03 Orthogroups_2024-Update
Seita.9G015400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.04 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Sobic.003G119100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.04 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.04 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G041000.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.04 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g036300 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g016890 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g026730 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen04g026190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen07g017190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 321
IPR002885 Pentatricopeptide_repeat 82 109
IPR002885 Pentatricopeptide_repeat 263 282
IPR002885 Pentatricopeptide_repeat 186 236
No external refs found!