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  5. Seita.7G293500.1

Seita.7G293500.1


Description : endoribonuclease *(MNU)


Gene families : OG_42_0005415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005415_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G293500.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
At5g09840 No alias Emb [Source:UniProtKB/TrEMBL;Acc:Q9FIC2] 0.03 Orthogroups_2024-Update
Bradi4g24700 No alias Putative endonuclease or glycosyl hydrolase 0.03 Orthogroups_2024-Update
Brara.B03904.1 No alias endoribonuclease *(MNU) 0.04 Orthogroups_2024-Update
Brara.J02359.1 No alias endoribonuclease *(MNU) 0.05 Orthogroups_2024-Update
Glyma.17G127700 No alias Putative endonuclease or glycosyl hydrolase 0.03 Orthogroups_2024-Update
LOC_Os11g06680 No alias expressed protein 0.03 Orthogroups_2024-Update
Potri.001G307700 No alias Putative endonuclease or glycosyl hydrolase 0.06 Orthogroups_2024-Update
Sobic.008G047500.1 No alias endoribonuclease *(MNU) 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025677 OST-HTH-assoc_dom 721 770
IPR025605 OST-HTH/LOTUS_dom 821 880
IPR025605 OST-HTH/LOTUS_dom 318 378
IPR021139 NYN_limkain-b1 105 242
No external refs found!