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  5. Seita.9G039000.1

Seita.9G039000.1


Description : component *(bL17c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0005563 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G039000.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
A4A49_36556 No alias 50s ribosomal protein l17, chloroplastic 0.1 Orthogroups_2024-Update
At3g54210 No alias 50S ribosomal protein L17, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi1g04130 No alias Ribosomal protein L17 family protein 0.09 Orthogroups_2024-Update
Brara.G01626.1 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Brara.I03693.1 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Cre02.g108850 No alias Ribosomal protein L17 family protein 0.14 Orthogroups_2024-Update
GRMZM2G108643 No alias Ribosomal protein L17 family protein 0.07 Orthogroups_2024-Update
Glyma.11G201700 No alias Ribosomal protein L17 family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G111640.1 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Kfl00372_0120 kfl00372_0120_v1.1 (at3g54210 : 186.0) Ribosomal protein L17 family... 0.1 Orthogroups_2024-Update
Mp8g05860.1 No alias component psRPL17 of large ribosomal subunit proteome 0.04 Orthogroups_2024-Update
PSME_00053604-RA No alias (at3g54210 : 244.0) Ribosomal protein L17 family... 0.02 Orthogroups_2024-Update
Potri.016G143100 No alias Ribosomal protein L17 family protein 0.05 Orthogroups_2024-Update
Pp1s37_63V6 No alias ribosomal protein l17-like protein 0.04 Orthogroups_2024-Update
Pp1s74_265V6 No alias ribosomal protein l17-like protein 0.11 Orthogroups_2024-Update
Sobic.001G040000.2 No alias component *(bL17c) of large plastid ribosomal-subunit proteome 0.3 Orthogroups_2024-Update
Solyc06g082750 No alias 50S ribosomal protein L17 (AHRD V3.3 *** A0A072UXJ8_MEDTR) 0.04 Orthogroups_2024-Update
Sopen06g034110 No alias Ribosomal protein L17 0.1 Orthogroups_2024-Update
evm.model.tig00000889.52 No alias (at3g54210 : 159.0) Ribosomal protein L17 family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000456 Ribosomal_L17 113 209
No external refs found!