1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G140100.1

Seita.9G140100.1


Description : hydroxymethylpyrimidine phosphate synthase *(ThiC)


Gene families : OG_42_0006147 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G140100.1
Cluster HCAA Clusters: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
120890 No alias thiaminC 0.03 Orthogroups_2024-Update
152730 No alias thiaminC 0.03 Orthogroups_2024-Update
Bradi1g12550 No alias thiaminC 0.06 Orthogroups_2024-Update
Glyma.18G065700 No alias thiaminC 0.04 Orthogroups_2024-Update
HORVU4Hr1G003580.22 No alias hydroxymethylpyrimidine phosphate synthase *(ThiC) 0.05 Orthogroups_2024-Update
LOC_Os03g47610 No alias thiamine biosynthesis protein thiC, putative, expressed 0.05 Orthogroups_2024-Update
Potri.001G249200 No alias thiaminC 0.04 Orthogroups_2024-Update
Potri.009G043200 No alias thiaminC 0.04 Orthogroups_2024-Update
Pp1s402_42V6 No alias thiamin biosynthesis protein 0.02 Orthogroups_2024-Update
Sobic.001G138000.1 No alias hydroxymethylpyrimidine phosphate synthase *(ThiC) 0.08 Orthogroups_2024-Update
Solyc06g006080 No alias thiamine biosynthesis protein ThiC 0.02 Orthogroups_2024-Update
Sopen06g002030 No alias ThiC family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0009228 thiamine biosynthetic process IEA 16Dec
MF GO:0051536 iron-sulfur cluster binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002817 ThiC/BzaA/B 164 584
No external refs found!