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  5. Seita.9G234200.1

Seita.9G234200.1


Description : E3 ubiquitin ligase *(CHY)


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G234200.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G250900 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G038130.3 No alias E3 ubiquitin ligase *(CHY) 0.04 Orthogroups_2024-Update
PSME_00018780-RA No alias (at5g25560 : 408.0) CHY-type/CTCHY-type/RING-type Zinc... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 145 188
IPR039512 RCHY1_zinc-ribbon 193 251
IPR008913 Znf_CHY 10 91
No external refs found!