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  5. Seita.9G339400.1

Seita.9G339400.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G339400.1
Cluster HCAA Clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
106861 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
424099 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
74762 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
98426 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
AC216235.2_FG010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At1g15510 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.03 Orthogroups_2024-Update
Bradi1g00491 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g60637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g15700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g52870 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Bradi4g33270 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A00474.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Brara.A00983.1 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
Brara.A02193.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F00415.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.F01619.1 No alias RNA editing factor *(ECD1) 0.05 Orthogroups_2024-Update
Brara.I01685.1 No alias RNA editing factor *(PGN) 0.05 Orthogroups_2024-Update
Brara.I04209.1 No alias RNA editing factor *(MEF100) 0.06 Orthogroups_2024-Update
Brara.J01291.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G000674 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G060536 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G098869 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G121579 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G006900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G205100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G227900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G007000 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
Glyma.05G008800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G240300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G173900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G141600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.10G190600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G146900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G179700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G259800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G141800 No alias mitochondrial RNAediting factor 1 0.04 Orthogroups_2024-Update
HORVU1Hr1G043480.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G058590.1 No alias RNA editing factor *(MEF1) 0.02 Orthogroups_2024-Update
HORVU5Hr1G113330.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU6Hr1G079830.1 No alias RNA editing factor *(CLB19) 0.03 Orthogroups_2024-Update
LOC_Os11g01836 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g08140 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_136326g0010 No alias (at5g09950 : 662.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_138676g0010 No alias (at3g49170 : 755.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00016653-RA No alias (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.01 Orthogroups_2024-Update
PSME_00052053-RA No alias (at1g11290 : 599.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
Potri.001G243800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G058700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G178200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G060600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G034400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G200500.3 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G239000.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G141600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.004G266300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.03 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.05 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G067000.1 No alias RNA editing factor *(MEF29) 0.02 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.010G232700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.05 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.06 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.03 Orthogroups_2024-Update
Solyc03g116840 No alias BED zinc finger,hAT family dimerization domain (AHRD... 0.02 Orthogroups_2024-Update
Solyc06g066080 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc10g008570 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.04 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen05g002740 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g026910 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g031050 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen10g004410 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g003140 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen12g002530 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004819 glutamine-tRNA ligase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 388 411
IPR002885 Pentatricopeptide_repeat 490 515
IPR002885 Pentatricopeptide_repeat 212 241
IPR002885 Pentatricopeptide_repeat 314 339
IPR002885 Pentatricopeptide_repeat 286 313
IPR002885 Pentatricopeptide_repeat 518 547
IPR002885 Pentatricopeptide_repeat 83 110
IPR002885 Pentatricopeptide_repeat 184 209
IPR002885 Pentatricopeptide_repeat 111 141
IPR002885 Pentatricopeptide_repeat 8 36
IPR002885 Pentatricopeptide_repeat 620 664
IPR032867 DYW_dom 832 924
No external refs found!