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  5. Seita.9G401600.1

Seita.9G401600.1


Description : component *(PRPF4) of spliceosomal U4/U6 snRNP


Gene families : OG_42_0004189 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004189_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G401600.1
Cluster HCAA Clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Sobic.001G370300.1 No alias component *(PRPF4) of spliceosomal U4/U6 snRNP 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR014906 PRP4-like 99 127
IPR001680 WD40_repeat 353 384
IPR001680 WD40_repeat 474 511
IPR001680 WD40_repeat 305 342
IPR001680 WD40_repeat 389 426
IPR001680 WD40_repeat 265 301
IPR001680 WD40_repeat 234 259
No external refs found!