Coexpression cluster: Cluster_56 (HCAA Clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003723 RNA binding 14.58% (14/96) 3.15 0.0 0.0
GO:0016070 RNA metabolic process 12.5% (12/96) 3.41 0.0 0.0
GO:0003676 nucleic acid binding 22.92% (22/96) 2.15 0.0 0.0
GO:0016875 ligase activity, forming carbon-oxygen bonds 6.25% (6/96) 5.08 0.0 1e-06
GO:0004812 aminoacyl-tRNA ligase activity 6.25% (6/96) 5.08 0.0 1e-06
GO:0043039 tRNA aminoacylation 6.25% (6/96) 5.1 0.0 1e-06
GO:0043038 amino acid activation 6.25% (6/96) 5.1 0.0 1e-06
GO:0006418 tRNA aminoacylation for protein translation 6.25% (6/96) 5.17 0.0 1e-06
GO:0090304 nucleic acid metabolic process 13.54% (13/96) 2.94 0.0 1e-06
GO:0034660 ncRNA metabolic process 7.29% (7/96) 4.24 0.0 3e-06
GO:0034641 cellular nitrogen compound metabolic process 16.67% (16/96) 2.32 0.0 3e-06
GO:0140101 catalytic activity, acting on a tRNA 6.25% (6/96) 4.65 0.0 4e-06
GO:0006399 tRNA metabolic process 6.25% (6/96) 4.6 0.0 4e-06
GO:0006139 nucleobase-containing compound metabolic process 13.54% (13/96) 2.61 0.0 4e-06
GO:1901363 heterocyclic compound binding 34.38% (33/96) 1.3 0.0 6e-06
GO:0097159 organic cyclic compound binding 34.38% (33/96) 1.3 0.0 6e-06
GO:0016874 ligase activity 6.25% (6/96) 4.41 0.0 7e-06
GO:0006725 cellular aromatic compound metabolic process 13.54% (13/96) 2.47 1e-06 9e-06
GO:0046483 heterocycle metabolic process 13.54% (13/96) 2.47 1e-06 9e-06
GO:0044424 intracellular part 15.62% (15/96) 2.21 1e-06 1e-05
GO:1901360 organic cyclic compound metabolic process 13.54% (13/96) 2.44 1e-06 1.1e-05
GO:0044464 cell part 15.62% (15/96) 2.14 1e-06 1.8e-05
GO:0006520 cellular amino acid metabolic process 6.25% (6/96) 3.94 3e-06 3.2e-05
GO:0140098 catalytic activity, acting on RNA 7.29% (7/96) 3.52 3e-06 3.4e-05
GO:0005488 binding 44.79% (43/96) 0.93 4e-06 4e-05
GO:0005643 nuclear pore 3.12% (3/96) 6.49 4e-06 4.7e-05
GO:0006396 RNA processing 5.21% (5/96) 3.51 8.2e-05 0.000832
GO:0016887 ATPase activity 5.21% (5/96) 3.44 0.000103 0.001012
GO:0043170 macromolecule metabolic process 21.88% (21/96) 1.26 0.000133 0.001263
GO:0008144 drug binding 15.62% (15/96) 1.56 0.00016 0.00142
GO:0019752 carboxylic acid metabolic process 6.25% (6/96) 2.87 0.000178 0.001443
GO:0006082 organic acid metabolic process 6.25% (6/96) 2.87 0.000178 0.001443
GO:0043436 oxoacid metabolic process 6.25% (6/96) 2.87 0.000178 0.001443
GO:0017056 structural constituent of nuclear pore 2.08% (2/96) 6.69 0.000159 0.001455
GO:0044428 nuclear part 4.17% (4/96) 3.71 0.000257 0.00191
GO:0044422 organelle part 6.25% (6/96) 2.78 0.000254 0.001939
GO:0044446 intracellular organelle part 6.25% (6/96) 2.78 0.000254 0.001939
GO:0035639 purine ribonucleoside triphosphate binding 15.62% (15/96) 1.47 0.000301 0.002124
GO:0003674 molecular_function 56.25% (54/96) 0.55 0.000301 0.002179
GO:0005524 ATP binding 14.58% (14/96) 1.53 0.000322 0.002212
GO:0006807 nitrogen compound metabolic process 21.88% (21/96) 1.16 0.000351 0.002356
GO:0006913 nucleocytoplasmic transport 2.08% (2/96) 5.79 0.000583 0.003729
GO:0051169 nuclear transport 2.08% (2/96) 5.79 0.000583 0.003729
GO:0043226 organelle 7.29% (7/96) 2.15 0.00104 0.006218
GO:0043229 intracellular organelle 7.29% (7/96) 2.15 0.00104 0.006218
GO:0005575 cellular_component 17.71% (17/96) 1.2 0.00104 0.006497
GO:0009987 cellular process 22.92% (22/96) 0.98 0.001278 0.00748
GO:0044237 cellular metabolic process 20.83% (20/96) 1.04 0.00134 0.007677
GO:0044281 small molecule metabolic process 6.25% (6/96) 2.29 0.0015 0.008419
GO:0005198 structural molecule activity 5.21% (5/96) 2.52 0.001888 0.010384
GO:0032991 protein-containing complex 8.33% (8/96) 1.82 0.00197 0.010621
GO:0032555 purine ribonucleotide binding 15.62% (15/96) 1.2 0.002077 0.010984
GO:0017076 purine nucleotide binding 15.62% (15/96) 1.19 0.002164 0.011228
GO:0017070 U6 snRNA binding 1.04% (1/96) 8.49 0.002776 0.011393
GO:0030623 U5 snRNA binding 1.04% (1/96) 8.49 0.002776 0.011393
GO:0034511 U3 snoRNA binding 1.04% (1/96) 8.49 0.002776 0.011393
GO:0017069 snRNA binding 1.04% (1/96) 8.49 0.002776 0.011393
GO:0003689 DNA clamp loader activity 1.04% (1/96) 8.49 0.002776 0.011393
GO:0005663 DNA replication factor C complex 1.04% (1/96) 8.49 0.002776 0.011393
GO:0033170 protein-DNA loading ATPase activity 1.04% (1/96) 8.49 0.002776 0.011393
GO:0006432 phenylalanyl-tRNA aminoacylation 1.04% (1/96) 8.49 0.002776 0.011393
GO:0032553 ribonucleotide binding 15.62% (15/96) 1.18 0.002281 0.011619
GO:0017111 nucleoside-triphosphatase activity 6.25% (6/96) 2.1 0.002883 0.011661
GO:0030554 adenyl nucleotide binding 14.58% (14/96) 1.23 0.002468 0.011909
GO:0032559 adenyl ribonucleotide binding 14.58% (14/96) 1.23 0.002427 0.011918
GO:0097367 carbohydrate derivative binding 15.62% (15/96) 1.18 0.002424 0.012118
GO:0036094 small molecule binding 16.67% (16/96) 1.11 0.002697 0.01257
GO:0043168 anion binding 16.67% (16/96) 1.11 0.002697 0.01257
GO:0016462 pyrophosphatase activity 6.25% (6/96) 2.04 0.00352 0.014028
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 6.25% (6/96) 2.02 0.003719 0.014406
GO:0016817 hydrolase activity, acting on acid anhydrides 6.25% (6/96) 2.02 0.003788 0.014467
GO:0044238 primary metabolic process 21.88% (21/96) 0.89 0.00371 0.014576
GO:0016579 protein deubiquitination 2.08% (2/96) 4.32 0.004518 0.016788
GO:0070646 protein modification by small protein removal 2.08% (2/96) 4.32 0.004518 0.016788
GO:1901265 nucleoside phosphate binding 15.62% (15/96) 1.07 0.004891 0.017699
GO:0000166 nucleotide binding 15.62% (15/96) 1.07 0.004891 0.017699
GO:0030014 CCR4-NOT complex 1.04% (1/96) 7.49 0.005544 0.018822
GO:0004826 phenylalanine-tRNA ligase activity 1.04% (1/96) 7.49 0.005544 0.018822
GO:0004819 glutamine-tRNA ligase activity 1.04% (1/96) 7.49 0.005544 0.018822
GO:0006425 glutaminyl-tRNA aminoacylation 1.04% (1/96) 7.49 0.005544 0.018822
GO:0042623 ATPase activity, coupled 2.08% (2/96) 4.21 0.005285 0.018875
GO:0071704 organic substance metabolic process 21.88% (21/96) 0.83 0.005874 0.0197
GO:0008152 metabolic process 22.92% (22/96) 0.8 0.00626 0.020741
GO:0006433 prolyl-tRNA aminoacylation 1.04% (1/96) 6.91 0.008305 0.026868
GO:0004827 proline-tRNA ligase activity 1.04% (1/96) 6.91 0.008305 0.026868
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity 2.08% (2/96) 3.74 0.009935 0.031046
GO:0101005 ubiquitinyl hydrolase activity 2.08% (2/96) 3.74 0.009935 0.031046
GO:0004843 thiol-dependent ubiquitin-specific protease activity 2.08% (2/96) 3.74 0.009935 0.031046
GO:0019783 ubiquitin-like protein-specific protease activity 2.08% (2/96) 3.71 0.010291 0.031798
GO:0030515 snoRNA binding 1.04% (1/96) 6.49 0.011058 0.033416
GO:0034645 cellular macromolecule biosynthetic process 5.21% (5/96) 1.91 0.010987 0.033573
GO:0043232 intracellular non-membrane-bounded organelle 4.17% (4/96) 2.18 0.012153 0.035935
GO:0043228 non-membrane-bounded organelle 4.17% (4/96) 2.18 0.012153 0.035935
GO:0008237 metallopeptidase activity 2.08% (2/96) 3.56 0.012546 0.036704
GO:0005730 nucleolus 1.04% (1/96) 6.17 0.013803 0.03954
GO:0008094 DNA-dependent ATPase activity 1.04% (1/96) 6.17 0.013803 0.03954
GO:0009059 macromolecule biosynthetic process 5.21% (5/96) 1.77 0.016114 0.045683
GO:0000049 tRNA binding 1.04% (1/96) 5.91 0.016541 0.046416
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_14 0.021 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_96 0.044 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_102 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_176 0.023 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_224 0.041 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_236 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_288 0.022 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_29 0.038 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_96 0.023 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_122 0.026 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_149 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_194 0.023 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_302 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_323 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_56 0.031 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_72 0.026 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_101 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_108 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_138 0.027 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_150 0.021 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_26 0.023 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_67 0.022 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_72 0.031 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_162 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_37 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_69 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_83 0.025 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_92 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_124 0.02 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_1 0.021 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_108 0.034 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_137 0.024 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_104 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_151 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_205 0.022 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_209 0.022 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_260 0.021 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_8 0.031 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_45 0.022 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_76 0.024 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.021 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_123 0.022 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_28 0.021 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_93 0.028 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_98 0.024 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_177 0.022 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_228 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_7 0.042 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.036 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_69 0.028 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_75 0.029 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_84 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_94 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_147 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_180 0.023 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_181 0.06 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_188 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_205 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_226 0.045 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_252 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_154 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_169 0.043 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_274 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_278 0.028 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_311 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_441 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_459 0.033 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_475 0.033 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_484 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_497 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_506 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_54 0.021 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_80 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_125 0.028 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_136 0.02 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_151 0.023 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_13 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_52 0.03 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_126 0.026 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_73 0.038 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_97 0.025 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_215 0.021 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0027 0.021 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0100 0.024 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0024 0.024 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0041 0.024 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0078 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0096 0.027 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0118 0.027 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_8 0.04 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_24 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_46 0.028 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_66 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_84 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_88 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_102 0.033 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_181 0.026 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_220 0.022 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_295 0.019 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_346 0.034 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_87 0.026 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_117 0.043 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_155 0.027 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_183 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_252 0.024 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_297 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_43 0.028 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_46 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_47 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_65 0.026 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_75 0.023 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_87 0.045 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_135 0.026 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_144 0.027 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_162 0.021 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_207 0.044 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_223 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_254 0.028 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_255 0.021 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_265 0.023 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_26 0.032 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_68 0.024 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_79 0.032 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_85 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_110 0.026 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_115 0.022 Orthogroups_2024-Update Compare
Sequences (96) (download table)

InterPro Domains

GO Terms

Family Terms