Coexpression cluster: Cluster_72 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003676 nucleic acid binding 13.53% (23/170) 1.82 0.0 1.1e-05
GO:0000375 RNA splicing, via transesterification reactions 2.35% (4/170) 6.12 0.0 1.2e-05
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 2.35% (4/170) 6.12 0.0 1.2e-05
GO:0000398 mRNA splicing, via spliceosome 2.35% (4/170) 6.12 0.0 1.2e-05
GO:0016071 mRNA metabolic process 3.53% (6/170) 4.48 0.0 1.4e-05
GO:0006397 mRNA processing 2.94% (5/170) 4.57 2e-06 8.9e-05
GO:0008380 RNA splicing 2.35% (4/170) 5.12 4e-06 0.000165
GO:0043227 membrane-bounded organelle 5.29% (9/170) 2.75 8e-06 0.000279
GO:0043231 intracellular membrane-bounded organelle 5.29% (9/170) 2.75 8e-06 0.000279
GO:0005634 nucleus 4.71% (8/170) 2.9 1.2e-05 0.000374
GO:0016579 protein deubiquitination 2.35% (4/170) 4.31 4.3e-05 0.001003
GO:0070646 protein modification by small protein removal 2.35% (4/170) 4.31 4.3e-05 0.001003
GO:0005488 binding 28.82% (49/170) 0.8 3.9e-05 0.001068
GO:0019783 ubiquitin-like protein-specific protease activity 2.35% (4/170) 4.12 7.4e-05 0.001415
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity 2.35% (4/170) 4.12 7.4e-05 0.001415
GO:0101005 ubiquitinyl hydrolase activity 2.35% (4/170) 4.12 7.4e-05 0.001415
GO:0016070 RNA metabolic process 5.88% (10/170) 2.16 8.9e-05 0.001584
GO:0044428 nuclear part 2.94% (5/170) 3.41 0.000103 0.001745
GO:0070647 protein modification by small protein conjugation or removal 2.94% (5/170) 3.27 0.000165 0.002637
GO:1901363 heterocyclic compound binding 18.82% (32/170) 0.91 0.000356 0.005151
GO:0097159 organic cyclic compound binding 18.82% (32/170) 0.91 0.000356 0.005151
GO:0043170 macromolecule metabolic process 15.88% (27/170) 0.99 0.000449 0.005941
GO:0003674 molecular_function 40.0% (68/170) 0.52 0.000434 0.006
GO:0044424 intracellular part 9.41% (16/170) 1.35 0.000554 0.006482
GO:0090304 nucleic acid metabolic process 6.47% (11/170) 1.72 0.000545 0.006623
GO:0001671 ATPase activator activity 1.18% (2/170) 5.71 0.000541 0.006851
GO:0044464 cell part 9.41% (16/170) 1.26 0.001074 0.012089
GO:0043226 organelle 5.29% (9/170) 1.76 0.001435 0.015044
GO:0043229 intracellular organelle 5.29% (9/170) 1.77 0.0014 0.015197
GO:0060590 ATPase regulator activity 1.18% (2/170) 4.9 0.001858 0.018823
GO:0043412 macromolecule modification 10.0% (17/170) 1.14 0.001952 0.019142
GO:0008234 cysteine-type peptidase activity 2.35% (4/170) 2.85 0.002309 0.021933
GO:0036211 protein modification process 9.41% (16/170) 1.12 0.002912 0.026041
GO:0006464 cellular protein modification process 9.41% (16/170) 1.12 0.002912 0.026041
GO:0044260 cellular macromolecule metabolic process 11.76% (20/170) 0.95 0.003602 0.03129
GO:0043414 macromolecule methylation 1.18% (2/170) 4.38 0.003906 0.032983
GO:0006396 RNA processing 2.94% (5/170) 2.23 0.004315 0.035454
GO:0003723 RNA binding 3.53% (6/170) 1.91 0.005491 0.043926
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_180 0.022 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_229 0.033 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_122 0.021 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_164 0.023 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_74 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_92 0.027 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_102 0.025 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_37 0.034 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_67 0.027 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_93 0.02 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_127 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_59 0.026 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_84 0.022 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_109 0.02 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_140 0.03 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_191 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_177 0.021 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_209 0.019 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_144 0.023 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_126 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_1 0.043 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_7 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_112 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_181 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_198 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_169 0.027 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_286 0.029 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_317 0.024 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_323 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_386 0.026 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_443 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_466 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_484 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_512 0.022 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_9 0.024 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_22 0.021 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_61 0.033 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_127 0.026 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_154 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_173 0.024 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0017 0.021 Orthogroups_2024-Update Compare
Oryza sativa HCCA clusters cluster_0028 0.02 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0130 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_259 0.021 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_85 0.023 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_76 0.029 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_144 0.027 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_56 0.031 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_60 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_76 0.022 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_89 0.023 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_170 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_216 0.027 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_55 0.026 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_74 0.022 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_114 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_115 0.023 Orthogroups_2024-Update Compare
Sequences (170) (download table)

InterPro Domains

GO Terms

Family Terms