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  5. Seita.9G425000.1

Seita.9G425000.1


Description : component *(bS1c) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0004607 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G425000.1
Cluster HCAA Clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64130 No alias ribosomal protein S1 0.07 Orthogroups_2024-Update
Brara.F02917.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Brara.I00435.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Cre09.g394750 No alias ribosomal protein S1 0.08 Orthogroups_2024-Update
GRMZM5G862107 No alias ribosomal protein S1 0.03 Orthogroups_2024-Update
Glyma.17G037700 No alias ribosomal protein S1 0.03 Orthogroups_2024-Update
Kfl00026_0040 kfl00026_0040_v1.1 (p29344|rr1_spiol : 344.0) 30S ribosomal protein S1,... 0.01 Orthogroups_2024-Update
MA_694512g0010 No alias (p29344|rr1_spiol : 262.0) 30S ribosomal protein S1,... 0.03 Orthogroups_2024-Update
Potri.008G101100 No alias ribosomal protein S1 0.06 Orthogroups_2024-Update
Potri.010G150300 No alias ribosomal protein S1 0.03 Orthogroups_2024-Update
Pp1s32_313V6 No alias 30s ribosomal protein s1 0.03 Orthogroups_2024-Update
Pp1s40_14V6 No alias 30s ribosomal protein s1 0.04 Orthogroups_2024-Update
Sobic.001G391400.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.19 Orthogroups_2024-Update
Solyc01g057830 No alias 30S ribosomal protein S1 (AHRD V3.3 *** W9RV42_9ROSA) 0.06 Orthogroups_2024-Update
Sopen01g023160 No alias S1 RNA binding domain 0.1 Orthogroups_2024-Update
evm.model.tig00000241.13 No alias (p29344|rr1_spiol : 291.0) 30S ribosomal protein S1,... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 257 326
IPR003029 S1_domain 180 243
No external refs found!