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  5. Seita.9G489900.1

Seita.9G489900.1


Description : plastidial RNA processing factor *(SVR7)


Gene families : OG_42_0001517 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.9G489900.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Bradi1g01021 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Bradi1g69827 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Brara.A01912.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
Brara.F03614.1 No alias endoribonuclease *(SOT1) 0.06 Orthogroups_2024-Update
Brara.H00857.1 No alias plastidial RNA processing factor *(SVR7) 0.03 Orthogroups_2024-Update
GRMZM2G017593 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.05G113300 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.15G118100 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.17G006500 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Glyma.17G153900 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G124070.4 No alias endoribonuclease *(SOT1) 0.03 Orthogroups_2024-Update
Potri.003G089600 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
Pp1s220_57V6 No alias F10E10.5; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Sobic.001G455500.1 No alias plastidial RNA processing factor *(SVR7) 0.07 Orthogroups_2024-Update
Solyc11g012670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen08g025700 No alias PPR repeat family 0.07 Orthogroups_2024-Update
Sopen11g007400 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 548 575
IPR033443 PPR_long 244 385
IPR002885 Pentatricopeptide_repeat 431 478
IPR002885 Pentatricopeptide_repeat 160 205
No external refs found!