Description : DNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]
Gene families : OG_42_0001606 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001606_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Arabidopsis release: At5g02820 | |
Cluster | HCCA clusters: Cluster_6 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_39025 | No alias | dna topoisomerase 6 subunit a | 0.03 | Orthogroups_2024-Update | |
Potri.006G132600 | No alias | Spo11/DNA topoisomerase VI, subunit A protein | 0.04 | Orthogroups_2024-Update | |
Solyc09g007210 | No alias | DNA topoisomerase 6 subunit A (AHRD V3.3 *** A0A0V0I1Z4_SOLCH) | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_2255.5 | No alias | (at5g02820 : 500.0) Involved in the patterning and shape... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00020902.41 | No alias | (at5g02820 : 489.0) Involved in the patterning and shape... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003824 | catalytic activity | IEA | InterProScan predictions |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
CC | GO:0005694 | chromosome | IEA | InterProScan predictions |
BP | GO:0006259 | DNA metabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000105 | histidine biosynthetic process | IEP | Predicted GO |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predicted GO |
BP | GO:0001101 | response to acid chemical | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003830 | beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity | IEP | Predicted GO |
MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
MF | GO:0003896 | DNA primase activity | IEP | Predicted GO |
MF | GO:0004635 | phosphoribosyl-AMP cyclohydrolase activity | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | Predicted GO |
BP | GO:0006270 | DNA replication initiation | IEP | Predicted GO |
BP | GO:0006275 | regulation of DNA replication | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006487 | protein N-linked glycosylation | IEP | Predicted GO |
BP | GO:0006547 | histidine metabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
BP | GO:0009415 | response to water | IEP | Predicted GO |
BP | GO:0009628 | response to abiotic stimulus | IEP | Predicted GO |
BP | GO:0010035 | response to inorganic substance | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Predicted GO |
BP | GO:0052803 | imidazole-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0070569 | uridylyltransferase activity | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901700 | response to oxygen-containing compound | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013049 | Spo11/TopoVI_A_N | 141 | 202 |
No external refs found! |