Coexpression cluster: Cluster_54 (HCCA clusters)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 15.43% (25/162) 3.55 0.0 0.0
GO:0006396 RNA processing 10.49% (17/162) 4.07 0.0 0.0
GO:0090304 nucleic acid metabolic process 15.43% (25/162) 2.98 0.0 0.0
GO:0008168 methyltransferase activity 9.26% (15/162) 3.94 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 9.26% (15/162) 3.84 0.0 0.0
GO:0034470 ncRNA processing 6.79% (11/162) 4.53 0.0 0.0
GO:0008173 RNA methyltransferase activity 4.94% (8/162) 5.45 0.0 0.0
GO:0046483 heterocycle metabolic process 16.67% (27/162) 2.28 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 16.67% (27/162) 2.28 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 16.05% (26/162) 2.35 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 16.67% (27/162) 2.25 0.0 0.0
GO:0003723 RNA binding 9.26% (15/162) 3.3 0.0 0.0
GO:0034660 ncRNA metabolic process 6.79% (11/162) 3.74 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 16.67% (27/162) 2.0 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 7.41% (12/162) 3.48 0.0 0.0
GO:0008033 tRNA processing 4.32% (7/162) 4.68 0.0 0.0
GO:0003676 nucleic acid binding 13.58% (22/162) 1.83 0.0 4e-06
GO:0008175 tRNA methyltransferase activity 1.85% (3/162) 6.77 1e-06 1.2e-05
GO:0009451 RNA modification 3.7% (6/162) 4.19 1e-06 1.3e-05
GO:0006399 tRNA metabolic process 4.32% (7/162) 3.49 3e-06 4.2e-05
GO:0006364 rRNA processing 2.47% (4/162) 4.38 3.6e-05 0.000481
GO:0016072 rRNA metabolic process 2.47% (4/162) 4.38 3.6e-05 0.000481
GO:0016423 tRNA (guanine) methyltransferase activity 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0043527 tRNA methyltransferase complex 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0034708 methyltransferase complex 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0030488 tRNA methylation 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0031515 tRNA (m1A) methyltransferase complex 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.23% (2/162) 6.77 8.3e-05 0.000852
GO:0032259 methylation 2.47% (4/162) 4.13 7.3e-05 0.000946
GO:0042254 ribosome biogenesis 1.85% (3/162) 4.9 0.000117 0.001088
GO:0022613 ribonucleoprotein complex biogenesis 1.85% (3/162) 4.9 0.000117 0.001088
GO:1990234 transferase complex 2.47% (4/162) 3.97 0.000116 0.001149
GO:0032774 RNA biosynthetic process 3.09% (5/162) 3.32 0.000144 0.001223
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 1.85% (3/162) 4.77 0.000155 0.001247
GO:0044085 cellular component biogenesis 1.85% (3/162) 4.77 0.000155 0.001247
GO:0097159 organic cyclic compound binding 19.75% (32/162) 0.98 0.000143 0.001251
GO:1901363 heterocyclic compound binding 19.75% (32/162) 0.98 0.000143 0.001251
GO:0043170 macromolecule metabolic process 16.67% (27/162) 1.06 0.000203 0.00155
GO:0006400 tRNA modification 1.85% (3/162) 4.66 0.0002 0.001568
GO:0140101 catalytic activity, acting on a tRNA 3.09% (5/162) 3.19 0.000217 0.00162
GO:0008170 N-methyltransferase activity 1.23% (2/162) 6.19 0.000247 0.001796
GO:0016740 transferase activity 13.58% (22/162) 1.15 0.000364 0.002585
GO:0001522 pseudouridine synthesis 1.85% (3/162) 4.04 0.00076 0.005268
GO:0030880 RNA polymerase complex 1.23% (2/162) 5.45 0.000814 0.00539
GO:0001510 RNA methylation 1.23% (2/162) 5.45 0.000814 0.00539
GO:0006807 nitrogen compound metabolic process 17.9% (29/162) 0.88 0.000885 0.005731
GO:0044237 cellular metabolic process 17.9% (29/162) 0.85 0.001233 0.007498
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.23% (2/162) 5.19 0.001214 0.007535
GO:1902494 catalytic complex 3.09% (5/162) 2.65 0.001207 0.007654
GO:0071704 organic substance metabolic process 19.14% (31/162) 0.79 0.001693 0.009895
GO:0017150 tRNA dihydrouridine synthase activity 1.23% (2/162) 4.97 0.001689 0.010066
GO:0044238 primary metabolic process 18.52% (30/162) 0.79 0.001867 0.010697
GO:0030684 preribosome 1.23% (2/162) 4.77 0.002238 0.012585
GO:0008152 metabolic process 22.22% (36/162) 0.67 0.002755 0.015203
GO:0043414 macromolecule methylation 1.23% (2/162) 4.45 0.003554 0.019258
GO:0003824 catalytic activity 24.07% (39/162) 0.61 0.003796 0.020198
GO:0006351 transcription, DNA-templated 1.85% (3/162) 3.15 0.004626 0.023766
GO:0097659 nucleic acid-templated transcription 1.85% (3/162) 3.15 0.004626 0.023766
GO:0005488 binding 24.69% (40/162) 0.58 0.004762 0.024051
GO:0006352 DNA-templated transcription, initiation 1.23% (2/162) 3.97 0.007018 0.034854
GO:0003674 molecular_function 37.04% (60/162) 0.41 0.007157 0.034963
GO:0004150 dihydroneopterin aldolase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0030686 90S preribosome 0.62% (1/162) 6.77 0.009132 0.036774
GO:0005542 folic acid binding 0.62% (1/162) 6.77 0.009132 0.036774
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0030677 ribonuclease P complex 0.62% (1/162) 6.77 0.009132 0.036774
GO:1902555 endoribonuclease complex 0.62% (1/162) 6.77 0.009132 0.036774
GO:0004797 thymidine kinase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0019136 deoxynucleoside kinase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:1905348 endonuclease complex 0.62% (1/162) 6.77 0.009132 0.036774
GO:0072341 modified amino acid binding 0.62% (1/162) 6.77 0.009132 0.036774
GO:0016426 tRNA (adenine) methyltransferase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0019206 nucleoside kinase activity 0.62% (1/162) 6.77 0.009132 0.036774
GO:0009987 cellular process 17.9% (29/162) 0.64 0.010155 0.040349
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_43 0.023 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_125 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_6 0.022 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_8 0.026 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_13 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_151 0.022 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_45 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_71 0.029 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_145 0.029 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0009 0.026 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_114 0.032 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_181 0.023 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_276 0.02 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_66 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_164 0.029 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_33 0.031 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_34 0.028 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_45 0.027 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_11 0.023 Orthogroups_2024-Update Compare
Sequences (162) (download table)

InterPro Domains

GO Terms

Family Terms