Coexpression cluster: Cluster_75 (HCCA clusters)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009059 macromolecule biosynthetic process 16.28% (7/43) 3.08 1.6e-05 0.00369
GO:0034645 cellular macromolecule biosynthetic process 13.95% (6/43) 3.11 5.9e-05 0.007038
GO:0019867 outer membrane 4.65% (2/43) 6.6 0.000154 0.012184
GO:0044237 cellular metabolic process 32.56% (14/43) 1.42 0.000377 0.014902
GO:0034641 cellular nitrogen compound metabolic process 23.26% (10/43) 1.84 0.000331 0.015699
GO:0044444 cytoplasmic part 13.95% (6/43) 2.71 0.000272 0.016129
GO:0009987 cellular process 34.88% (15/43) 1.31 0.000478 0.016181
GO:1901576 organic substance biosynthetic process 16.28% (7/43) 2.0 0.00158 0.01628
GO:0043043 peptide biosynthetic process 9.3% (4/43) 3.14 0.001037 0.016378
GO:0034660 ncRNA metabolic process 9.3% (4/43) 3.19 0.00091 0.016593
GO:0044464 cell part 18.6% (8/43) 1.82 0.001555 0.016755
GO:0043604 amide biosynthetic process 9.3% (4/43) 3.0 0.001489 0.01681
GO:0043228 non-membrane-bounded organelle 9.3% (4/43) 3.02 0.001433 0.016985
GO:0043232 intracellular non-membrane-bounded organelle 9.3% (4/43) 3.02 0.001433 0.016985
GO:0006518 peptide metabolic process 9.3% (4/43) 3.08 0.001224 0.01706
GO:0003735 structural constituent of ribosome 9.3% (4/43) 3.21 0.000871 0.017194
GO:0006412 translation 9.3% (4/43) 3.21 0.000871 0.017194
GO:0044271 cellular nitrogen compound biosynthetic process 13.95% (6/43) 2.35 0.001035 0.017529
GO:0044249 cellular biosynthetic process 16.28% (7/43) 2.07 0.001195 0.0177
GO:0043226 organelle 11.63% (5/43) 2.46 0.002022 0.017751
GO:0043229 intracellular organelle 11.63% (5/43) 2.46 0.002022 0.017751
GO:0005198 structural molecule activity 9.3% (4/43) 3.03 0.001379 0.018153
GO:1990904 ribonucleoprotein complex 9.3% (4/43) 2.9 0.001926 0.018257
GO:0043603 cellular amide metabolic process 9.3% (4/43) 2.92 0.001859 0.018354
GO:0043170 macromolecule metabolic process 27.91% (12/43) 1.51 0.00062 0.01836
GO:0016070 RNA metabolic process 13.95% (6/43) 2.43 0.000782 0.018533
GO:0140098 catalytic activity, acting on RNA 9.3% (4/43) 2.83 0.002287 0.019359
GO:0005840 ribosome 9.3% (4/43) 3.26 0.000759 0.019989
GO:0140101 catalytic activity, acting on a tRNA 6.98% (3/43) 3.46 0.002487 0.020324
GO:0009058 biosynthetic process 16.28% (7/43) 1.85 0.002801 0.02213
GO:0043244 regulation of protein complex disassembly 2.33% (1/43) 7.6 0.005147 0.024893
GO:0043243 positive regulation of protein complex disassembly 2.33% (1/43) 7.6 0.005147 0.024893
GO:0006448 regulation of translational elongation 2.33% (1/43) 7.6 0.005147 0.024893
GO:0006449 regulation of translational termination 2.33% (1/43) 7.6 0.005147 0.024893
GO:0006417 regulation of translation 2.33% (1/43) 7.6 0.005147 0.024893
GO:0045727 positive regulation of translation 2.33% (1/43) 7.6 0.005147 0.024893
GO:0051130 positive regulation of cellular component organization 2.33% (1/43) 7.6 0.005147 0.024893
GO:0045901 positive regulation of translational elongation 2.33% (1/43) 7.6 0.005147 0.024893
GO:0006452 translational frameshifting 2.33% (1/43) 7.6 0.005147 0.024893
GO:0045905 positive regulation of translational termination 2.33% (1/43) 7.6 0.005147 0.024893
GO:0010608 posttranscriptional regulation of gene expression 2.33% (1/43) 7.6 0.005147 0.024893
GO:0034250 positive regulation of cellular amide metabolic process 2.33% (1/43) 7.6 0.005147 0.024893
GO:0034248 regulation of cellular amide metabolic process 2.33% (1/43) 7.6 0.005147 0.024893
GO:0032270 positive regulation of cellular protein metabolic process 2.33% (1/43) 7.6 0.005147 0.024893
GO:0051247 positive regulation of protein metabolic process 2.33% (1/43) 7.6 0.005147 0.024893
GO:0090304 nucleic acid metabolic process 13.95% (6/43) 1.83 0.006342 0.03006
GO:0031968 organelle outer membrane 2.33% (1/43) 6.6 0.010267 0.031602
GO:0098805 whole membrane 2.33% (1/43) 6.6 0.010267 0.031602
GO:0009893 positive regulation of metabolic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0031325 positive regulation of cellular metabolic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0010628 positive regulation of gene expression 2.33% (1/43) 6.6 0.010267 0.031602
GO:0010604 positive regulation of macromolecule metabolic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0010557 positive regulation of macromolecule biosynthetic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0043022 ribosome binding 2.33% (1/43) 6.6 0.010267 0.031602
GO:0009891 positive regulation of biosynthetic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0048518 positive regulation of biological process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0005741 mitochondrial outer membrane 2.33% (1/43) 6.6 0.010267 0.031602
GO:0031328 positive regulation of cellular biosynthetic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters 2.33% (1/43) 6.6 0.010267 0.031602
GO:0004827 proline-tRNA ligase activity 2.33% (1/43) 6.6 0.010267 0.031602
GO:0000213 tRNA-intron endonuclease activity 2.33% (1/43) 6.6 0.010267 0.031602
GO:0051173 positive regulation of nitrogen compound metabolic process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0006419 alanyl-tRNA aminoacylation 2.33% (1/43) 6.6 0.010267 0.031602
GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters 2.33% (1/43) 6.6 0.010267 0.031602
GO:0006433 prolyl-tRNA aminoacylation 2.33% (1/43) 6.6 0.010267 0.031602
GO:0048522 positive regulation of cellular process 2.33% (1/43) 6.6 0.010267 0.031602
GO:0004549 tRNA-specific ribonuclease activity 2.33% (1/43) 6.6 0.010267 0.031602
GO:0004813 alanine-tRNA ligase activity 2.33% (1/43) 6.6 0.010267 0.031602
GO:1901363 heterocyclic compound binding 27.91% (12/43) 1.1 0.006963 0.031736
GO:0097159 organic cyclic compound binding 27.91% (12/43) 1.1 0.006963 0.031736
GO:0044424 intracellular part 16.28% (7/43) 1.73 0.00459 0.032963
GO:0071704 organic substance metabolic process 30.23% (13/43) 1.11 0.004556 0.033745
GO:0006399 tRNA metabolic process 6.98% (3/43) 3.16 0.004443 0.033966
GO:0005575 cellular_component 23.26% (10/43) 1.23 0.007872 0.035203
GO:0008135 translation factor activity, RNA binding 4.65% (2/43) 4.21 0.005107 0.035596
GO:0044238 primary metabolic process 27.91% (12/43) 1.08 0.008167 0.035845
GO:0008152 metabolic process 32.56% (14/43) 0.88 0.013197 0.040098
GO:0006807 nitrogen compound metabolic process 25.58% (11/43) 1.11 0.009575 0.041259
GO:0006418 tRNA aminoacylation for protein translation 4.65% (2/43) 3.47 0.013825 0.041475
GO:0005488 binding 34.88% (15/43) 0.82 0.0144 0.042659
GO:0098588 bounding membrane of organelle 2.33% (1/43) 6.02 0.015362 0.044949
GO:0043039 tRNA aminoacylation 4.65% (2/43) 3.32 0.016996 0.046837
GO:0004812 aminoacyl-tRNA ligase activity 4.65% (2/43) 3.32 0.016996 0.046837
GO:0016875 ligase activity, forming carbon-oxygen bonds 4.65% (2/43) 3.32 0.016996 0.046837
GO:0043038 amino acid activation 4.65% (2/43) 3.32 0.016996 0.046837
GO:0006139 nucleobase-containing compound metabolic process 13.95% (6/43) 1.53 0.01647 0.047601
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_96 0.02 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_151 0.022 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_205 0.03 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_268 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_29 0.025 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_84 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_42 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_155 0.021 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_190 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_184 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_258 0.02 Orthogroups_2024-Update Compare
Pseudotsuga menziesii HCCA clusters Cluster_85 0.021 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_57 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.025 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_196 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_400 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_444 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_495 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_510 0.022 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_134 0.022 Orthogroups_2024-Update Compare
Nicotiana attenuata HCCA clusters Cluster_136 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_35 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0027 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_24 0.028 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_91 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_157 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_240 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_336 0.023 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_390 0.022 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.023 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_66 0.024 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_162 0.034 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_238 0.021 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_45 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_22 0.038 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_136 0.023 Orthogroups_2024-Update Compare
Sequences (43) (download table)

InterPro Domains

GO Terms

Family Terms