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  5. Mp3g08820.1

Mp3g08820.1


Description : exoribonuclease (RAT1/XRN2)


Gene families : OG_42_0000619 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000619_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Marchantia polymorpha: Mp3g08820.1
Cluster HCAA Clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Bradi1g05660 No alias exoribonuclease 4 0.03 Orthogroups_2024-Update
Brara.G03366.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G099630 No alias exoribonuclease 4 0.04 Orthogroups_2024-Update
Glyma.17G257100 No alias 5\'-3\' exoribonuclease 3 0.02 Orthogroups_2024-Update
Glyma.19G242400 No alias exoribonuclease 4 0.03 Orthogroups_2024-Update
HORVU3Hr1G082310.12 No alias exoribonuclease *(RAT1/XRN2) 0.02 Orthogroups_2024-Update
HORVU5Hr1G082940.4 No alias Unknown function 0.02 Orthogroups_2024-Update
MA_17503g0010 No alias (at1g75660 : 553.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update
PSME_00004038-RA No alias (at1g75660 : 1056.0) Encodes a protein with similarity... 0.03 Orthogroups_2024-Update
Sobic.005G022200.4 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g081280 No alias 5'-3' exoribonuclease 3 (AHRD V3.3 *** AT1G75660.1) 0.02 Orthogroups_2024-Update
evm.model.contig_2341.1 No alias (at1g75660 : 358.0) Encodes a protein with similarity to... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004527 exonuclease activity IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 263 277
IPR004859 Put_53exo 1 253
No external refs found!