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  5. At5g35910

At5g35910


Description : Protein RRP6-like 2 [Source:UniProtKB/Swiss-Prot;Acc:A9LLI7]


Gene families : OG_42_0002816 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002816_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At5g35910
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
84661 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.02 Orthogroups_2024-Update
Glyma.05G089300 No alias Polynucleotidyl transferase, ribonuclease H fold protein... 0.03 Orthogroups_2024-Update
Kfl00263_0080 kfl00263_0080_v1.1 (at5g35910 : 289.0) Polynucleotidyl transferase,... 0.02 Orthogroups_2024-Update
Mp7g12880.1 No alias exoribonuclease (RRP6L) 0.02 Orthogroups_2024-Update
Seita.9G243800.1 No alias exoribonuclease *(RRP6L) 0.02 Orthogroups_2024-Update
evm.model.contig_3509.4 No alias (at5g35910 : 207.0) Polynucleotidyl transferase,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEA InterProScan predictions
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
BP GO:0006139 nucleobase-containing compound metabolic process IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0008408 3'-5' exonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002121 HRDC_dom 482 549
IPR012588 Exosome-assoc_fac_Rrp6_N 39 121
IPR002562 3'-5'_exonuclease_dom 262 428
No external refs found!