At5g64140

Description : RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91]

Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At5g64140
Cluster	HCCA clusters: Cluster_8

Target	Alias	Description	ECC score	Gene Family Method
170205	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	Orthogroups_2024-Update
Bradi3g00500	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Orthogroups_2024-Update
Bradi4g13890	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Orthogroups_2024-Update
Bradi4g13910	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Orthogroups_2024-Update
Brara.C00134.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.F02295.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Cre12.g510450	No alias	Nucleic acid-binding, OB-fold-like protein	0.13	Orthogroups_2024-Update
GRMZM2G124143	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Orthogroups_2024-Update
GRMZM2G455828	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Orthogroups_2024-Update
HORVU3Hr1G115820.3	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Kfl00237_0050	kfl00237_0050_v1.1	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
LOC_Os10g27174	No alias	40S ribosomal protein S28, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00016821-RA	No alias	(p46302\|rs28_maize : 97.4) 40S ribosomal protein S28 -...	0.04	Orthogroups_2024-Update
Potri.008G013200	No alias	ribosomal protein S28	0.09	Orthogroups_2024-Update
Potri.010G245400	No alias	ribosomal protein S28	0.04	Orthogroups_2024-Update
Potri.016G063100	No alias	ribosomal protein S28	0.05	Orthogroups_2024-Update
Pp1s21_362V6	No alias	40s ribosomal protein s28	0.1	Orthogroups_2024-Update
Pp1s279_27V6	No alias	40s ribosomal protein s28	0.13	Orthogroups_2024-Update
Pp1s313_15V6	No alias	40s ribosomal protein s28	0.11	Orthogroups_2024-Update
Pp1s34_107V6	No alias	40s ribosomal protein s28	0.07	Orthogroups_2024-Update
Sobic.001G402050.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.001G493001.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Solyc02g021400	No alias	40S ribosomal protein S28 (AHRD V3.3 - W9SEX7_9ROSA)	0.05	Orthogroups_2024-Update
Solyc10g078630	No alias	40S ribosomal protein S28 (AHRD V3.3 - W9SEX7_9ROSA)	0.07	Orthogroups_2024-Update
evm.model.tig00000194.27	No alias	(p46302\|rs28_maize : 101.0) 40S ribosomal protein S28 -...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Predicted GO
CC	GO:0000178	exosome (RNase complex)	IEP	Predicted GO
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predicted GO
CC	GO:0000808	origin recognition complex	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004797	thymidine kinase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006353	DNA-templated transcription, termination	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006547	histidine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0016851	magnesium chelatase activity	IEP	Predicted GO
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019206	nucleoside kinase activity	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0030686	90S preribosome	IEP	Predicted GO
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044429	mitochondrial part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
MF	GO:0046422	violaxanthin de-epoxidase activity	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0051002	ligase activity, forming nitrogen-metal bonds	IEP	Predicted GO
MF	GO:0051003	ligase activity, forming nitrogen-metal bonds, forming coordination complexes	IEP	Predicted GO
BP	GO:0052803	imidazole-containing compound metabolic process	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
CC	GO:1905354	exoribonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	4	63

External Links

No external refs found!

At5g64140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation