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  5. Solyc04g050490

Solyc04g050490


Description : carboxyl-terminal peptidase (DUF239) (AHRD V3.3 *** AT5G18460.1)


Gene families : OG_42_0000240 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc04g050490
Cluster HCCA clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
415608 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
438522 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
92536 No alias Protein of Unknown Function (DUF239) 0.02 Orthogroups_2024-Update
A4A49_35122 No alias hypothetical protein 0.02 Orthogroups_2024-Update
At2g44240 No alias At2g44240/F4I1.5 [Source:UniProtKB/TrEMBL;Acc:O64859] 0.03 Orthogroups_2024-Update
Brara.B01264.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02277.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02278.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I05186.1 No alias regulatory protein *(LOTR) involved in Casparian strip formation 0.03 Orthogroups_2024-Update
Brara.J01082.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.14G142700 No alias Protein of Unknown Function (DUF239) 0.05 Orthogroups_2024-Update
Glyma.14G213700 No alias Protein of Unknown Function (DUF239) 0.03 Orthogroups_2024-Update
HORVU7Hr1G108240.10 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g37000 No alias carboxyl-terminal peptidase, putative, expressed 0.03 Orthogroups_2024-Update
Potri.013G050900 No alias Protein of Unknown Function (DUF239) 0.04 Orthogroups_2024-Update
Seita.2G363400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G120400.1 No alias regulatory protein *(LOTR) involved in Casparian strip formation 0.03 Orthogroups_2024-Update
Sobic.009G060800.1 No alias regulatory protein *(LOTR) involved in Casparian strip formation 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004314 Neprosin 299 398
IPR004314 Neprosin 203 297
IPR025521 Neprosin_propep 58 189
No external refs found!