Description : (at3g57660 : 513.0) Encodes a subunit of RNA polymerase I (aka RNA polymerase A).; nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink). & (p60288|rpoc1_phypa : 84.0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Physcomitrella patens (Moss) & (reliability: 1026.0) & (original description: no original description)
Gene families : OG_42_0005280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005280_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Cyanophora release: evm.model.tig00000203.25 | |
Cluster | HCCA clusters: Cluster_32 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre12.g529600 | No alias | nuclear RNA polymerase A1 | 0.01 | Orthogroups_2024-Update | |
HORVU5Hr1G117770.4 | No alias | component *(NRPA1) of RNA polymerase I complex | 0.03 | Orthogroups_2024-Update | |
LOC_Os06g40950 | No alias | DNA-directed RNA polymerase I subunit RPA1, putative, expressed | 0.01 | Orthogroups_2024-Update | |
PSME_00012715-RA | No alias | (at3g57660 : 132.0) Encodes a subunit of RNA polymerase... | 0.01 | Orthogroups_2024-Update | |
Pp1s338_40V6 | No alias | dna-directed rna polymerase i largest | 0.02 | Orthogroups_2024-Update | |
Sobic.009G217200.1 | No alias | component *(NRPA1) of RNA polymerase I complex | 0.01 | Orthogroups_2024-Update | |
Sopen10g030910 | No alias | RNA polymerase Rpb1, domain 5 | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006413 | translational initiation | IEP | Predicted GO |
BP | GO:0007165 | signal transduction | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
BP | GO:0032259 | methylation | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
BP | GO:0065007 | biological regulation | IEP | Predicted GO |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
No external refs found! |