evm.model.tig00000796.23

Description : (at3g26560 : 485.0) ATP-dependent RNA helicase, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Domain of unknown function DUF1605 (InterPro:IPR011709), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.2); Has 53052 Blast hits to 35825 proteins in 3176 species: Archae - 195; Bacteria - 13845; Metazoa - 17201; Fungi - 5520; Plants - 3365; Viruses - 1203; Other Eukaryotes - 11723 (source: NCBI BLink). & (reliability: 970.0) & (original description: no original description)

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Cyanophora release: evm.model.tig00000796.23
Cluster	HCCA clusters: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
At1g32490	No alias	ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]	0.01	Orthogroups_2024-Update
Bradi2g26670	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Bradi3g59870	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Cre07.g329150	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g349100	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Cre07.g352251	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre12.g520150	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Cre24.g755347	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Kfl00085_0100	kfl00085_0100_v1.1	(at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2...	0.03	Orthogroups_2024-Update
PSME_00053286-RA	No alias	(at1g32490 : 593.0) Encodes a homolog of the yeast PRP2...	0.01	Orthogroups_2024-Update
Pp1s312_57V6	No alias	deah-box rna helicase	0.01	Orthogroups_2024-Update
Pp1s38_83V6	No alias	atp-dependent rna	0.01	Orthogroups_2024-Update
Seita.4G042700.1	No alias	RNA helicase *(Prp22)	0.02	Orthogroups_2024-Update
Sobic.009G254100.1	No alias	RNA helicase *(Prp22)	0.02	Orthogroups_2024-Update
Sobic.010G059500.1	No alias	Unknown function	0.01	Orthogroups_2024-Update
Sopen12g030910	No alias	Helicase associated domain (HA2)	0.01	Orthogroups_2024-Update
evm.model.contig_450.3	No alias	(at3g62310 : 264.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
evm.model.contig_524.2	No alias	(at3g62310 : 724.0) RNA helicase family protein;...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003747	translation release factor activity	IEP	Predicted GO
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006415	translational termination	IEP	Predicted GO
MF	GO:0008079	translation termination factor activity	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
MF	GO:0008276	protein methyltransferase activity	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
MF	GO:0015098	molybdate ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015689	molybdate ion transport	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predicted GO
BP	GO:0022411	cellular component disassembly	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0032984	protein-containing complex disassembly	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0042054	histone methyltransferase activity	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043624	cellular protein complex disassembly	IEP	Predicted GO
MF	GO:0070403	NAD+ binding	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	269	362
IPR007502	Helicase-assoc_dom	448	527

External Links

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evm.model.tig00000796.23

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation