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  5. Solyc05g007870

Solyc05g007870


Description : R2R3MYB transcription factor 117


Gene families : OG_42_0000047 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000047_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc05g007870
Cluster HCCA clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
At3g29020 No alias Myb domain protein 110 [Source:UniProtKB/TrEMBL;Acc:F4J1R5] 0.03 Orthogroups_2024-Update
At5g11050 No alias Transcription factor MYB64... 0.03 Orthogroups_2024-Update
Brara.B00731.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.03 Orthogroups_2024-Update
Brara.I03821.1 No alias MYB class-R2R3 subgroup-22/23 transcription factor 0.03 Orthogroups_2024-Update
Brara.I04806.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.03 Orthogroups_2024-Update
Brara.J01778.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G121570 No alias myb domain protein 119 0.02 Orthogroups_2024-Update
Glyma.01G217500 No alias myb domain protein 3r-5 0.03 Orthogroups_2024-Update
Glyma.02G253100 No alias myb domain protein 109 0.04 Orthogroups_2024-Update
Glyma.03G073764 No alias myb domain protein 118 0.02 Orthogroups_2024-Update
Glyma.05G005400 No alias myb domain protein 118 0.03 Orthogroups_2024-Update
Glyma.09G169300 No alias myb domain protein 52 0.02 Orthogroups_2024-Update
Glyma.16G072700 No alias myb domain protein 98 0.04 Orthogroups_2024-Update
Glyma.17G237900 No alias myb domain protein r1 0.03 Orthogroups_2024-Update
HORVU1Hr1G029540.25 No alias R1R2R3-MYB transcription factor & mobile transcription... 0.03 Orthogroups_2024-Update
HORVU5Hr1G049880.1 No alias MYB class-R2R3 subgroup-22/23 transcription factor 0.04 Orthogroups_2024-Update
Kfl00026_0540 kfl00026_0540_v1.1 (at5g40360 : 115.0) putative transcription factor... 0.02 Orthogroups_2024-Update
PSME_00025751-RA No alias (at3g50060 : 193.0) Encodes a member of the R2R3... 0.04 Orthogroups_2024-Update
PSME_00056098-RA No alias (at5g67300 : 191.0) Member of the R2R3 factor MYB gene... 0.02 Orthogroups_2024-Update
Potri.006G241700 No alias myb domain protein 3r-4 0.02 Orthogroups_2024-Update
Potri.007G106100 No alias myb domain protein 69 0.03 Orthogroups_2024-Update
Potri.007G134500 No alias myb domain protein 52 0.03 Orthogroups_2024-Update
Potri.008G070900 No alias myb domain protein 73 0.02 Orthogroups_2024-Update
Potri.014G035100 No alias myb domain protein 73 0.02 Orthogroups_2024-Update
Potri.015G033600 No alias myb domain protein 52 0.04 Orthogroups_2024-Update
Potri.017G085200 No alias myb domain protein 105 0.04 Orthogroups_2024-Update
Pp1s120_159V6 No alias myb3r-4 (myb domain protein 3r-4) dna binding... 0.03 Orthogroups_2024-Update
Seita.5G043800.1 No alias MYB class-R2R3 subgroup-21 transcription factor 0.03 Orthogroups_2024-Update
Seita.9G054400.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 120 165
IPR001005 SANT/Myb 172 214
No external refs found!