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  5. evm.model.tig00001408.13

evm.model.tig00001408.13


Description : no hits & (original description: no original description)


Gene families : OG_42_0005241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005241_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00001408.13
Cluster HCCA clusters: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
Bradi1g10697 No alias Vacuolar sorting protein 39 0.01 Orthogroups_2024-Update
HORVU4Hr1G008150.1 No alias HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 Orthogroups_2024-Update
Mp3g21320.1 No alias HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.01 Orthogroups_2024-Update
PSME_00006404-RA No alias (at4g36630 : 575.0) EMBRYO DEFECTIVE 2754 (EMB2754);... 0.02 Orthogroups_2024-Update
Solyc07g056660 No alias Vacuolar sorting protein 39 (AHRD V3.3 *** AT4G36630.1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004057 arginyltransferase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009235 cobalamin metabolic process IEP Predicted GO
BP GO:0009236 cobalamin biosynthetic process IEP Predicted GO
BP GO:0016598 protein arginylation IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016852 sirohydrochlorin cobaltochelatase activity IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 348 411
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 606 715
IPR001180 CNH_dom 19 239
No external refs found!