1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. evm.model.tig00021127.16

evm.model.tig00021127.16


Description : (at1g18100 : 80.1) Encodes a member of the FT and TFL1 family of phosphatidylethanolamine-binding proteins. It is expressed in seeds and up-regulated in response to ABA. Loss of function mutants show decreased rate of germination in the presence of ABA. ABA dependent regulation is mediated by both ABI3 and ABI5. ABI5 promotes MFT expression, primarily in the radicle-hypocotyl transition zone and ABI3 suppresses it in the seed.; E12A11; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT5G03840.1); Has 2417 Blast hits to 2417 proteins in 371 species: Archae - 0; Bacteria - 118; Metazoa - 639; Fungi - 192; Plants - 1429; Viruses - 3; Other Eukaryotes - 36 (source: NCBI BLink). & (reliability: 160.2) & (original description: no original description)


Gene families : OG_42_0000178 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000178_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Cyanophora release: evm.model.tig00021127.16
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G440005 No alias PEBP (phosphatidylethanolamine-binding protein) family protein 0.01 Orthogroups_2024-Update
LOC_Os11g05470 No alias RCN1 Centroradialis-like1 homogous to TFL1 gene;... 0.02 Orthogroups_2024-Update
PSME_00022211-RA No alias (q9xh44|cet1_tobac : 209.0) CEN-like protein 1 -... 0.01 Orthogroups_2024-Update
Sobic.006G128500.1 No alias florigen component *(FT) 0.02 Orthogroups_2024-Update
Solyc09g009560 No alias Terminal flower 1 (AHRD V3.3 *** A0A172JD62_FRAAN) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
InterPro domains Description Start Stop
IPR008914 PEBP 44 178
No external refs found!