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  5. Solyc05g049980

Solyc05g049980


Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4)


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc05g049980
Cluster HCCA clusters: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
A4A49_11852 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
Bradi1g53430 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g09597 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g13260 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G135763 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G348602 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G210900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G256100 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G213400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g54030 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00040829-RA No alias (at3g61490 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.004G073900 No alias Pectin lyase-like superfamily protein 0.06 Orthogroups_2024-Update
Sobic.004G319600.2 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Solyc06g060170 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1) 0.03 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 158 436
No external refs found!