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  5. Kfl00166_0220

Kfl00166_0220 (kfl00166_0220_v1.1,...)


Aliases : kfl00166_0220_v1.1, kfl00166_0220_v1.1

Description : (at3g45630 : 268.0) RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink). & (reliability: 536.0) & (original description: no original description)


Gene families : OG_42_0002171 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00166_0220
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
At2g28540 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.02 Orthogroups_2024-Update
At3g45630 No alias RNA binding (RRM/RBD/RNP motifs) family protein... 0.05 Orthogroups_2024-Update
Bradi4g45240 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.13G329600 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Potri.006G132300 No alias RNA binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
Seita.6G218300.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
Sobic.005G001000.1 No alias component *(NOT4) of mRNA deadenylation CCR4-NOT complex 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 190
No external refs found!