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  5. Kfl00216_0140

Kfl00216_0140 (kfl00216_0140_v1.1)


Aliases : kfl00216_0140_v1.1

Description : (at1g13980 : 1073.0) Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. It appears that heteotypic binding between the DCB and C-terminal domains of two GNOM proteins is required for membrane association, however, GNOM appears to exist predominantly as a heterodimer formed through DCB-DCB interactions.; GNOM (GN); FUNCTIONS IN: protein homodimerization activity, GTP:GDP antiporter activity; INVOLVED IN: in 13 processes; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: GNOM-like 1 (TAIR:AT5G39500.1). & (reliability: 2146.0) & (original description: no original description)


Gene families : OG_42_0001315 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001315_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00216_0140
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_07266 No alias arf guanine-nucleotide exchange factor gnom 0.02 Orthogroups_2024-Update
A4A49_23151 No alias arf guanine-nucleotide exchange factor gnom 0.02 Orthogroups_2024-Update
Bradi1g12920 No alias sec7 domain-containing protein 0.03 Orthogroups_2024-Update
Bradi1g74210 No alias sec7 domain-containing protein 0.02 Orthogroups_2024-Update
Cre07.g334100 No alias sec7 domain-containing protein 0.04 Orthogroups_2024-Update
Glyma.11G221900 No alias sec7 domain-containing protein 0.02 Orthogroups_2024-Update
Glyma.18G035700 No alias sec7 domain-containing protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G088970.4 No alias ARF-GTPase guanyl-nucleotide exchange factor *(GBF) 0.03 Orthogroups_2024-Update
MA_10434215g0010 No alias (at1g13980 : 2061.0) Encodes a GDP/GTP exchange factor... 0.02 Orthogroups_2024-Update
PSME_00031865-RA No alias (at3g60860 : 551.0) SEC7-like guanine nucleotide... 0.03 Orthogroups_2024-Update
PSME_00034438-RA No alias (at1g13980 : 2105.0) Encodes a GDP/GTP exchange factor... 0.03 Orthogroups_2024-Update
PSME_00052848-RA No alias (at1g13980 : 1854.0) Encodes a GDP/GTP exchange factor... 0.02 Orthogroups_2024-Update
Pp1s29_251V6 No alias pattern formation 0.02 Orthogroups_2024-Update
Pp1s99_63V6 No alias pattern formation 0.03 Orthogroups_2024-Update
Seita.4G238300.1 No alias ARF-GTPase guanyl-nucleotide exchange factor *(GBF) 0.05 Orthogroups_2024-Update
Sobic.001G301200.1 No alias ARF-GTPase guanyl-nucleotide exchange factor *(GBF) 0.03 Orthogroups_2024-Update
Solyc02g088290 No alias Pattern formation protein EMB30 (AHRD V3.3 *** A0A0B2PDV3_GLYSO) 0.03 Orthogroups_2024-Update
evm.model.tig00000241.27 No alias (at5g19610 : 149.0) GNOM-like 2 (GNL2); FUNCTIONS IN:... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEA InterProScan predictions
BP GO:0032012 regulation of ARF protein signal transduction IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0001505 regulation of neurotransmitter levels IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004779 sulfate adenylyltransferase activity IEP Predicted GO
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006544 glycine metabolic process IEP Predicted GO
BP GO:0006546 glycine catabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
MF GO:0008705 methionine synthase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009071 serine family amino acid catabolic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0031419 cobalamin binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Predicted GO
BP GO:0042133 neurotransmitter metabolic process IEP Predicted GO
BP GO:0042135 neurotransmitter catabolic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000904 Sec7_dom 719 902
IPR032691 Sec7_N 472 628
IPR032629 DCB_dom 80 213
No external refs found!