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  5. Kfl00306_0020

Kfl00306_0020 (kfl00306_0020_v1.1)


Aliases : kfl00306_0020_v1.1

Description : (at3g48500 : 155.0) PIGMENT DEFECTIVE 312 (PDE312); LOCATED IN: plastid chromosome, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 95 Blast hits to 93 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 14; Plants - 42; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)


Gene families : OG_42_0008388 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Klebsormidium release: Kfl00306_0020
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
438805 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
At3g48500 No alias Nucleic acid-binding, OB-fold-like protein... 0.02 Orthogroups_2024-Update
Bradi2g57887 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
Glyma.04G193700 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Mp4g08250.1 No alias PAP3/TAC10 cofactor of plastid-encoded RNA polymerase 0.02 Orthogroups_2024-Update
Potri.015G091700 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
Pp1s3_467V6 No alias constans interacting protein 5 0.04 Orthogroups_2024-Update
Seita.5G417800.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10) 0.03 Orthogroups_2024-Update
Sobic.003G392000.1 No alias cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000176 nuclear exosome (RNase complex) IEP Predicted GO
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!