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  5. LOC_Os01g33540

LOC_Os01g33540


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g33540
Cluster HCCA clusters: cluster_0130

Target Alias Description ECC score Gene Family Method Actions
Bradi1g72196 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Glyma.02G312300 No alias FAR1-related sequence 9 0.03 Orthogroups_2024-Update
Glyma.15G032800 No alias FAR1-related sequence 4 0.02 Orthogroups_2024-Update
HORVU4Hr1G077050.6 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g32700 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g62660 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Potri.016G059200 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Sobic.010G181200.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Solyc07g045520 No alias FAR1-related sequence 10 (AHRD V3.3 *** AT5G28530.3) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 2 40
No external refs found!