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LOC_Os01g42900


Description : ABC-2 type transporter domain containing protein, expressed


Gene families : OG_42_0000830 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g42900
Cluster HCCA clusters: cluster_0140

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G124860.3 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Mp1g25240.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
MF GO:0016887 ATPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 342 546
IPR003439 ABC_transporter-like 68 218
No external refs found!