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  5. Solyc07g018360

Solyc07g018360


Description : Elongation factor Ts (AHRD V3.3 *** K4CCP7_SOLLC)


Gene families : OG_42_0004408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g018360
Cluster HCCA clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi3g05950 No alias elongation factor Ts family protein 0.04 Orthogroups_2024-Update
Brara.H01455.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Kfl00185_0100 kfl00185_0100_v1.1 (at4g29060 : 513.0) embryo defective 2726 (emb2726);... 0.02 Orthogroups_2024-Update
Potri.018G083850 No alias elongation factor Ts family protein 0.03 Orthogroups_2024-Update
Sopen07g007510 No alias Elongation factor TS 0.02 Orthogroups_2024-Update
evm.model.tig00021319.56 No alias (at4g29060 : 193.0) embryo defective 2726 (emb2726);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003746 translation elongation factor activity IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
BP GO:0006414 translational elongation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR014039 Transl_elong_EFTs/EF1B_dimer 891 1034
IPR014039 Transl_elong_EFTs/EF1B_dimer 652 794
IPR003029 S1_domain 260 323
IPR003029 S1_domain 147 217
No external refs found!