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  5. LOC_Os01g74040

LOC_Os01g74040


Description : zinc finger, RING-type, putative, expressed


Gene families : OG_42_0001974 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os01g74040
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
A4A49_12307 No alias e3 ubiquitin-protein ligase rduf1 0.02 Orthogroups_2024-Update
GRMZM2G567897 No alias zinc finger (C3HC4-type RING finger) family protein 0.02 Orthogroups_2024-Update
Glyma.02G249100 No alias RING-H2 finger C2A 0.02 Orthogroups_2024-Update
Glyma.07G134600 No alias RING-H2 finger C2A 0.03 Orthogroups_2024-Update
HORVU1Hr1G004330.4 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 Orthogroups_2024-Update
Sobic.001G422900.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.009G010400.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006189 'de novo' IMP biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 9 41
IPR010543 DUF1117 203 315
IPR001841 Znf_RING 130 172
No external refs found!