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  5. LOC_Os03g03070

LOC_Os03g03070


Description : transcription factor, putative, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os03g03070
Cluster HCCA clusters: cluster_0038

Target Alias Description ECC score Gene Family Method Actions
A4A49_15806 No alias developmental protein sepallata 1 0.02 Orthogroups_2024-Update
A4A49_18077 No alias floral homeotic protein apetala 1 c 0.02 Orthogroups_2024-Update
A4A49_19521 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
At1g01530 No alias AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04] 0.02 Orthogroups_2024-Update
At2g34440 No alias AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29] 0.02 Orthogroups_2024-Update
At3g61120 No alias Agamous-like MADS-box protein AGL13... 0.03 Orthogroups_2024-Update
At4g22950 No alias Agamous-like MADS-box protein AGL19... 0.03 Orthogroups_2024-Update
Bradi1g48520 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi4g34680 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.B03164.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.C01460.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D02091.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.D02757.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.H01136.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02103.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.01G020500 No alias AGAMOUS-like 21 0.02 Orthogroups_2024-Update
Glyma.01G064100 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.03G019300 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.06G117600 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.19G034500 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G008300.3 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G095090.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G002330.8 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g66030 No alias OsMADS2 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g38770 No alias OsMADS61 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
MA_211156g0010 No alias (q40885|ag_pethy : 164.0) Floral homeotic protein... 0.02 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.03 Orthogroups_2024-Update
Potri.009G084100 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Potri.013G104900 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.01 Orthogroups_2024-Update
Pp1s88_174V6 No alias mads box 0.02 Orthogroups_2024-Update
Seita.2G002300.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Seita.6G223600.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.010G029200.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g103550 No alias LOW QUALITY:Transcription factor, MADS-box (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g076700 No alias MADS-box transcription factor (AHRD V3.3 *** G7IS85_MEDTR) 0.02 Orthogroups_2024-Update
Solyc06g035570 No alias No description available 0.02 Orthogroups_2024-Update
Sopen12g029850 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update
evm.model.contig_454.6 No alias (at3g57230 : 92.4) MADS-box transcription factor.... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 9 92
No external refs found!