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  5. LOC_Os04g20420

LOC_Os04g20420


Description : DNA binding protein, putative, expressed


Gene families : OG_42_0000408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g20420
Cluster HCCA clusters: cluster_0056

Target Alias Description ECC score Gene Family Method Actions
PSME_00044238-RA No alias (at5g11730 : 452.0) Core-2/I-branching... 0.02 Orthogroups_2024-Update
Pp1s165_47V6 No alias T22P22.120; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Solyc01g103150 No alias Core-2/I-branching... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008375 acetylglucosaminyltransferase activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0003713 transcription coactivator activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006333 chromatin assembly or disassembly IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 144 371
No external refs found!