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  5. LOC_Os04g52720

LOC_Os04g52720


Description : Cupin domain containing protein, expressed


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g52720
Cluster HCCA clusters: cluster_0021

Target Alias Description ECC score Gene Family Method Actions
229747 No alias germin-like protein 5 0.02 Orthogroups_2024-Update
428138 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
92738 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
A4A49_13720 No alias nectarin-1 0.03 Orthogroups_2024-Update
At3g05930 No alias Germin-like protein subfamily 2 member 3... 0.03 Orthogroups_2024-Update
At5g39110 No alias Germin-like protein subfamily 1 member 14... 0.02 Orthogroups_2024-Update
Bradi2g08790 No alias germin-like protein 10 0.02 Orthogroups_2024-Update
Bradi2g60870 No alias germin-like protein subfamily 2 member 2 precursor 0.03 Orthogroups_2024-Update
Bradi3g15210 No alias RmlC-like cupins superfamily protein 0.04 Orthogroups_2024-Update
Brara.G02258.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.16G007700 No alias germin-like protein 1 0.03 Orthogroups_2024-Update
HORVU4Hr1G090130.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G090190.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G109190.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G066380.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G089510.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G091800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g18170 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g32980 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_3366g0010 No alias (at1g09560 : 259.0) germin-like protein (GLP5);... 0.02 Orthogroups_2024-Update
MA_90151g0010 No alias (at1g09560 : 194.0) germin-like protein (GLP5);... 0.02 Orthogroups_2024-Update
PSME_00008477-RA No alias (at1g09560 : 213.0) germin-like protein (GLP5);... 0.03 Orthogroups_2024-Update
Potri.011G163800 No alias RmlC-like cupins superfamily protein 0.02 Orthogroups_2024-Update
Seita.5G035500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G050100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G136200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G066600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G066816.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G067000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g088300 No alias Germin-like protein 1 (AHRD V3.3 *** B9NCV4_POPTR) 0.02 Orthogroups_2024-Update
Sopen09g032930 No alias Cupin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0045735 nutrient reservoir activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 69 219
No external refs found!