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  5. LOC_Os05g22770

LOC_Os05g22770


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g22770
Cluster HCCA clusters: cluster_0125

Target Alias Description ECC score Gene Family Method Actions
At1g36020 No alias DEAD/DEAH-box RNA helicase family protein... 0.05 Orthogroups_2024-Update
LOC_Os10g13690 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 486 552
IPR013103 RVT_2 848 1072
No external refs found!