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  5. LOC_Os05g40280

LOC_Os05g40280


Description : B3 DNA binding domain containing protein, expressed


Gene families : OG_42_0001074 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001074_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g40280
Cluster HCCA clusters: cluster_0076

Target Alias Description ECC score Gene Family Method Actions
412738 No alias AP2/B3-like transcriptional factor family protein 0.05 Orthogroups_2024-Update
At5g58280 No alias AP2/B3-like transcriptional factor family protein... 0.03 Orthogroups_2024-Update
Bradi2g22130 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
GRMZM2G111123 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Potri.014G031700 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
Sobic.K044414.1 No alias REM-type transcription factor 0.02 Orthogroups_2024-Update
Solyc06g007530 No alias LOW QUALITY:B3 domain-containing protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 139 227
No external refs found!