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  5. LOC_Os05g47670

LOC_Os05g47670


Description : zinc finger, C3HC4 type domain containing protein, expressed


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g47670
Cluster HCCA clusters: cluster_0028

Target Alias Description ECC score Gene Family Method Actions
A4A49_05648 No alias putative e3 ubiquitin-protein ligase hip1 0.02 Orthogroups_2024-Update
At5g24870 No alias At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775] 0.03 Orthogroups_2024-Update
Bradi5g20760 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.C01860.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.F00132.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.K01654.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 Orthogroups_2024-Update
GRMZM2G118344 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G241900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G076600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G214600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os04g51400 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00030521-RA No alias (at5g10650 : 105.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G373700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G124300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G274700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.009G100100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G097100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G262700.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc05g008840 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1) 0.02 Orthogroups_2024-Update
Solyc10g050170 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G15530.7) 0.04 Orthogroups_2024-Update
Sopen05g004600 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen12g030650 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 316 358
No external refs found!