Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9IGL4_POPTR)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc09g009790 | |
Cluster | HCCA clusters: Cluster_185 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
134463 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
82024 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi1g35640 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g48960 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A01531.1 | No alias | plastidial RNA splicing factor *(OTP70) | 0.03 | Orthogroups_2024-Update | |
Brara.F03378.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Brara.G03165.1 | No alias | RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
Glyma.12G118200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.13G119700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU1Hr1G074220.1 | No alias | RNA editing factor *(MEF21) | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g43470 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os06g08650 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g24680 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os11g01836 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_126037g0020 | No alias | (at4g02750 : 474.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
MA_3471g0010 | No alias | (at4g13650 : 601.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_462184g0010 | No alias | (at4g13650 : 568.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_615077g0010 | No alias | (at3g12770 : 607.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
PSME_00005383-RA | No alias | (at3g12770 : 329.0) Encodes a pentatricopeptide repeat... | 0.02 | Orthogroups_2024-Update | |
Potri.005G019400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.016G053500 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
Potri.016G065500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Pp1s13_264V6 | No alias | F4I10.100; pentatricopeptide (PPR) repeat-containing... | 0.02 | Orthogroups_2024-Update | |
Seita.5G468800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G384800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g038750 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
Sopen09g027460 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen09g031050 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
Sopen09g035030 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen11g001910 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen11g004720 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen11g029050 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_2025.47 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003712 | transcription coregulator activity | IEP | Predicted GO |
MF | GO:0003714 | transcription corepressor activity | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
MF | GO:0003918 | DNA topoisomerase type II (ATP-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0003954 | NADH dehydrogenase activity | IEP | Predicted GO |
MF | GO:0004129 | cytochrome-c oxidase activity | IEP | Predicted GO |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
CC | GO:0005694 | chromosome | IEP | Predicted GO |
CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0008094 | DNA-dependent ATPase activity | IEP | Predicted GO |
MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Predicted GO |
MF | GO:0015002 | heme-copper terminal oxidase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Predicted GO |
MF | GO:0016675 | oxidoreductase activity, acting on a heme group of donors | IEP | Predicted GO |
MF | GO:0016676 | oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Predicted GO |
MF | GO:0061505 | DNA topoisomerase II activity | IEP | Predicted GO |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 76 | 123 |
IPR002885 | Pentatricopeptide_repeat | 177 | 224 |
IPR002885 | Pentatricopeptide_repeat | 278 | 326 |
IPR002885 | Pentatricopeptide_repeat | 380 | 427 |
IPR002885 | Pentatricopeptide_repeat | 354 | 378 |
IPR002885 | Pentatricopeptide_repeat | 455 | 480 |
IPR032867 | DYW_dom | 556 | 677 |
No external refs found! |