LOC_Os12g13720

Description : Plant PDR ABC transporter associated domain containing protein, expressed

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os12g13720
Cluster	HCCA clusters: cluster_0005

Target	Alias	Description	ECC score	Gene Family Method
412710	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Brara.A03065.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Brara.E00778.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Brara.F01033.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Brara.F01068.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Brara.H02545.1	No alias	subfamily ABCG transporter	0.04	Orthogroups_2024-Update
Glyma.03G192600	No alias	pleiotropic drug resistance 6	0.03	Orthogroups_2024-Update
HORVU3Hr1G053350.8	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
HORVU7Hr1G092510.2	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Kfl00010_0550	kfl00010_0550_v1.1	(q76cu2\|pdr1_tobac : 717.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
Kfl00056_0220	kfl00056_0220_v1.1	(q7pc80\|pdr1_orysa : 1395.0) Probable pleiotropic drug...	0.02	Orthogroups_2024-Update
Kfl00175_0190	kfl00175_0190_v1.1	(at2g29940 : 809.0) pleiotropic drug resistance 3...	0.01	Orthogroups_2024-Update
MA_173274g0010	No alias	(q5z9s8\|pdr12_orysa : 429.0) Pleiotropic drug resistance...	0.03	Orthogroups_2024-Update
MA_249533g0010	No alias	(at2g29940 : 311.0) pleiotropic drug resistance 3...	0.02	Orthogroups_2024-Update
PSME_00001762-RA	No alias	(q5z9s8\|pdr12_orysa : 1873.0) Pleiotropic drug...	0.03	Orthogroups_2024-Update
PSME_00010410-RA	No alias	(q8gu88\|pdr7_orysa : 1693.0) Putative pleiotropic drug...	0.03	Orthogroups_2024-Update
Potri.003G179000	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Potri.010G235800	No alias	pleiotropic drug resistance 6	0.02	Orthogroups_2024-Update
Seita.2G179600.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Seita.4G181500.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.003G216166.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Sobic.008G033700.2	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Solyc09g091660	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.03	Orthogroups_2024-Update
Sopen05g032100	No alias	ABC-2 type transporter	0.02	Orthogroups_2024-Update
Sopen09g034570	No alias	ABC-2 type transporter	0.02	Orthogroups_2024-Update
evm.model.contig_2361.1	No alias	(at2g29940 : 539.0) pleiotropic drug resistance 3...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Predicted GO
MF	GO:0004645	phosphorylase activity	IEP	Predicted GO
MF	GO:0005542	folic acid binding	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006007	glucose catabolic process	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
BP	GO:0006766	vitamin metabolic process	IEP	Predicted GO
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predicted GO
BP	GO:0006772	thiamine metabolic process	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008184	glycogen phosphorylase activity	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009110	vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0009228	thiamine biosynthetic process	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0010215	cellulose microfibril organization	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
BP	GO:0016049	cell growth	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016866	intramolecular transferase activity	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019318	hexose metabolic process	IEP	Predicted GO
BP	GO:0019320	hexose catabolic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO
BP	GO:0030198	extracellular matrix organization	IEP	Predicted GO
CC	GO:0031225	anchored component of membrane	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0033218	amide binding	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0040007	growth	IEP	Predicted GO
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predicted GO
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043062	extracellular structure organization	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0044282	small molecule catabolic process	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045454	cell redox homeostasis	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0046365	monosaccharide catabolic process	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
MF	GO:0072341	modified amino acid binding	IEP	Predicted GO
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	652	804
IPR013581	PDR_assoc	531	581
IPR013525	ABC_2_trans	949	1165
IPR013525	ABC_2_trans	313	524

External Links

No external refs found!

LOC_Os12g13720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation