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  5. Cre01.g063997

Cre01.g063997


Description : CTC-interacting domain 4


Gene families : OG_42_0003413 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003413_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre01.g063997
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Bradi1g56090 No alias CTC-interacting domain 4 0.03 Orthogroups_2024-Update
GRMZM2G056773 No alias CTC-interacting domain 4 0.02 Orthogroups_2024-Update
Glyma.07G036300 No alias CTC-interacting domain 4 0.02 Orthogroups_2024-Update
Glyma.13G346900 No alias CTC-interacting domain 4 0.02 Orthogroups_2024-Update
Glyma.15G027500 No alias CTC-interacting domain 4 0.02 Orthogroups_2024-Update
Kfl00044_0330 kfl00044_0330_v1.... (at3g14010 : 130.0) hydroxyproline-rich glycoprotein... 0.01 Orthogroups_2024-Update
PSME_00008192-RA No alias (at3g14010 : 95.1) hydroxyproline-rich glycoprotein... 0.02 Orthogroups_2024-Update
Pp1s358_21V6 No alias cid4 (ctc-interacting domain 4) protein binding 0.01 Orthogroups_2024-Update
Sopen03g040770 No alias LsmAD domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009187 cyclic nucleotide metabolic process IEP Predicted GO
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025852 SM_dom_ATX 51 133
IPR009604 LsmAD_domain 204 275
No external refs found!