Description : DNA-directed RNA polymerase family protein
Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Chlamydomonas release: Cre02.g075150 | |
Cluster | HCCA clusters: Cluster_72 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
148107 | No alias | DNA-directed RNA polymerase family protein | 0.01 | Orthogroups_2024-Update | |
At4g21710 | No alias | DNA-directed RNA polymerase II subunit 2... | 0.02 | Orthogroups_2024-Update | |
At5g45140 | No alias | DNA-directed RNA polymerase III subunit 2... | 0.01 | Orthogroups_2024-Update | |
Bradi1g13720 | No alias | DNA-directed RNA polymerase family protein | 0.02 | Orthogroups_2024-Update | |
Brara.C04571.1 | No alias | component *(NRPB2) of RNA polymerase II complex | 0.01 | Orthogroups_2024-Update | |
Glyma.04G061000 | No alias | nuclear RNA polymerase D2A | 0.03 | Orthogroups_2024-Update | |
Glyma.15G172100 | No alias | DNA-directed RNA polymerase family protein | 0.02 | Orthogroups_2024-Update | |
Kfl00016_0440 | kfl00016_0440_v1.1 | (at4g21710 : 1847.0) Encodes the unique second-largest... | 0.02 | Orthogroups_2024-Update | |
MA_10432131g0010 | No alias | (at4g21710 : 490.0) Encodes the unique second-largest... | 0.01 | Orthogroups_2024-Update | |
Pp1s19_315V6 | No alias | rna polymerase iii subunit rpc2 | 0.02 | Orthogroups_2024-Update | |
Pp1s84_245V6 | No alias | rna polymerase ii second largest subunit | 0.01 | Orthogroups_2024-Update | |
Seita.1G002700.1 | No alias | component *(NRPC2) of RNA polymerase III complex | 0.01 | Orthogroups_2024-Update | |
Seita.7G258200.1 | No alias | component *(NRPE2) of RNA polymerase V complex &... | 0.01 | Orthogroups_2024-Update | |
Sobic.006G236000.2 | No alias | component *(NRPE2) of RNA polymerase V complex &... | 0.01 | Orthogroups_2024-Update | |
evm.model.tig00000158.16 | No alias | (at4g21710 : 946.0) Encodes the unique second-largest... | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0005049 | nuclear export signal receptor activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Predicted GO |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0006366 | transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0007010 | cytoskeleton organization | IEP | Predicted GO |
CC | GO:0008023 | transcription elongation factor complex | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
MF | GO:0015298 | solute:cation antiporter activity | IEP | Predicted GO |
MF | GO:0015299 | solute:proton antiporter activity | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0017069 | snRNA binding | IEP | Predicted GO |
MF | GO:0017070 | U6 snRNA binding | IEP | Predicted GO |
MF | GO:0030623 | U5 snRNA binding | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0070566 | adenylyltransferase activity | IEP | Predicted GO |
MF | GO:0140104 | molecular carrier activity | IEP | Predicted GO |
MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predicted GO |
No external refs found! |