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  5. Cre02.g117900

Cre02.g117900


Description : RNA helicase, ATP-dependent, SK12/DOB1 protein


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre02.g117900
Cluster HCCA clusters: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
A4A49_32982 No alias dexh-box atp-dependent rna helicase dexh10 0.01 Orthogroups_2024-Update
At1g59760 No alias DExH-box ATP-dependent RNA helicase DExH9... 0.02 Orthogroups_2024-Update
Bradi1g52230 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Orthogroups_2024-Update
Bradi3g04550 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Bradi4g24170 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Brara.A02352.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.02 Orthogroups_2024-Update
Brara.I01587.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
GRMZM2G040995 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G028060.16 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 Orthogroups_2024-Update
HORVU7Hr1G001080.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 Orthogroups_2024-Update
Kfl00024_0010 kfl00024_0010_v1.1 (at3g46960 : 612.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update
Potri.004G228700 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 Orthogroups_2024-Update
Pp1s69_14V6 No alias superkiller viralicidic activity 2-like 2 0.02 Orthogroups_2024-Update
Seita.4G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 Orthogroups_2024-Update
Sobic.003G042400.1 No alias RNA helicase component *(HEN2) of Nuclear Exosome... 0.01 Orthogroups_2024-Update
Sobic.010G003400.1 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.04 Orthogroups_2024-Update
Sopen05g027830 No alias rRNA-processing arch domain 0.02 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0031418 L-ascorbic acid binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 99 245
IPR012961 Ski2_C 933 1125
IPR025696 rRNA_proc-arch_dom 561 905
IPR001650 Helicase_C 428 507
No external refs found!