Coexpression cluster: Cluster_99 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016070 RNA metabolic process 12.26% (13/106) 3.22 0.0 0.0
GO:0016741 transferase activity, transferring one-carbon groups 8.49% (9/106) 3.71 0.0 4e-06
GO:0090304 nucleic acid metabolic process 12.26% (13/106) 2.64 0.0 1.4e-05
GO:0008168 methyltransferase activity 7.55% (8/106) 3.65 0.0 1.6e-05
GO:0006396 RNA processing 7.55% (8/106) 3.59 0.0 1.7e-05
GO:0006139 nucleobase-containing compound metabolic process 14.15% (15/106) 2.17 1e-06 5e-05
GO:0046483 heterocycle metabolic process 14.15% (15/106) 2.04 3e-06 9.5e-05
GO:0003676 nucleic acid binding 15.09% (16/106) 1.98 3e-06 9.7e-05
GO:0006725 cellular aromatic compound metabolic process 14.15% (15/106) 2.05 3e-06 0.000105
GO:1901360 organic cyclic compound metabolic process 14.15% (15/106) 2.01 4e-06 0.000113
GO:0003723 RNA binding 7.55% (8/106) 3.0 7e-06 0.00017
GO:0034470 ncRNA processing 4.72% (5/106) 4.01 1.4e-05 0.000312
GO:0034641 cellular nitrogen compound metabolic process 14.15% (15/106) 1.77 3.2e-05 0.000632
GO:0009451 RNA modification 3.77% (4/106) 4.22 6.1e-05 0.001137
GO:0140098 catalytic activity, acting on RNA 5.66% (6/106) 3.09 7.6e-05 0.001311
GO:0008173 RNA methyltransferase activity 2.83% (3/106) 4.65 0.00022 0.003004
GO:0031406 carboxylic acid binding 1.89% (2/106) 6.39 0.000211 0.003041
GO:0043177 organic acid binding 1.89% (2/106) 6.39 0.000211 0.003041
GO:0016072 rRNA metabolic process 2.83% (3/106) 4.58 0.000255 0.003157
GO:0006364 rRNA processing 2.83% (3/106) 4.58 0.000255 0.003157
GO:0034660 ncRNA metabolic process 4.72% (5/106) 3.22 0.000203 0.003306
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 2.83% (3/106) 4.45 0.000337 0.003978
GO:0097747 RNA polymerase activity 2.83% (3/106) 4.39 0.000383 0.00415
GO:0034062 5'-3' RNA polymerase activity 2.83% (3/106) 4.39 0.000383 0.00415
GO:0016763 transferase activity, transferring pentosyl groups 1.89% (2/106) 5.58 0.000728 0.007575
GO:0097659 nucleic acid-templated transcription 2.83% (3/106) 3.76 0.00139 0.013384
GO:0006351 transcription, DNA-templated 2.83% (3/106) 3.76 0.00139 0.013384
GO:0016740 transferase activity 14.15% (15/106) 1.21 0.001977 0.018361
GO:0006400 tRNA modification 1.89% (2/106) 4.69 0.002643 0.023693
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity 0.94% (1/106) 7.39 0.005975 0.028769
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0019213 deacetylase activity 0.94% (1/106) 7.39 0.005975 0.028769
GO:1901269 lipooligosaccharide metabolic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0031418 L-ascorbic acid binding 0.94% (1/106) 7.39 0.005975 0.028769
GO:0046493 lipid A metabolic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0000178 exosome (RNase complex) 0.94% (1/106) 7.39 0.005975 0.028769
GO:0019856 pyrimidine nucleobase biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:1905354 exoribonuclease complex 0.94% (1/106) 7.39 0.005975 0.028769
GO:0009245 lipid A biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0006177 GMP biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0008378 galactosyltransferase activity 0.94% (1/106) 7.39 0.005975 0.028769
GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors 0.94% (1/106) 7.39 0.005975 0.028769
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.94% (1/106) 7.39 0.005975 0.028769
GO:0006206 pyrimidine nucleobase metabolic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0004590 orotidine-5'-phosphate decarboxylase activity 0.94% (1/106) 7.39 0.005975 0.028769
GO:1901070 guanosine-containing compound biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0046037 GMP metabolic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:1901271 lipooligosaccharide biosynthetic process 0.94% (1/106) 7.39 0.005975 0.028769
GO:0030014 CCR4-NOT complex 0.94% (1/106) 7.39 0.005975 0.028769
GO:0016779 nucleotidyltransferase activity 2.83% (3/106) 2.99 0.00635 0.029482
GO:0001522 pseudouridine synthesis 1.89% (2/106) 4.06 0.006264 0.029613
GO:0044237 cellular metabolic process 18.87% (20/106) 0.93 0.003568 0.030924
GO:1901657 glycosyl compound metabolic process 1.89% (2/106) 4.3 0.004536 0.035742
GO:0009116 nucleoside metabolic process 1.89% (2/106) 4.3 0.004536 0.035742
GO:0032774 RNA biosynthetic process 2.83% (3/106) 3.19 0.004342 0.036416
GO:0044238 primary metabolic process 18.87% (20/106) 0.82 0.008037 0.036659
GO:1901363 heterocyclic compound binding 17.92% (19/106) 0.84 0.008899 0.039215
GO:0097159 organic cyclic compound binding 17.92% (19/106) 0.84 0.008899 0.039215
GO:0008152 metabolic process 23.58% (25/106) 0.76 0.005156 0.039431
GO:0071704 organic substance metabolic process 18.87% (20/106) 0.77 0.012028 0.044675
GO:0009163 nucleoside biosynthetic process 0.94% (1/106) 6.39 0.011915 0.044897
GO:0046129 purine ribonucleoside biosynthetic process 0.94% (1/106) 6.39 0.011915 0.044897
GO:0140102 catalytic activity, acting on a rRNA 0.94% (1/106) 6.39 0.011915 0.044897
GO:0016597 amino acid binding 0.94% (1/106) 6.39 0.011915 0.044897
GO:0008649 rRNA methyltransferase activity 0.94% (1/106) 6.39 0.011915 0.044897
GO:1901659 glycosyl compound biosynthetic process 0.94% (1/106) 6.39 0.011915 0.044897
GO:0042455 ribonucleoside biosynthetic process 0.94% (1/106) 6.39 0.011915 0.044897
GO:0016743 carboxyl- or carbamoyltransferase activity 0.94% (1/106) 6.39 0.011915 0.044897
GO:0042451 purine nucleoside biosynthetic process 0.94% (1/106) 6.39 0.011915 0.044897
GO:0003674 molecular_function 38.68% (41/106) 0.47 0.010582 0.045857
GO:0006807 nitrogen compound metabolic process 16.98% (18/106) 0.81 0.013278 0.048623
GO:0008033 tRNA processing 1.89% (2/106) 3.48 0.013796 0.049821
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_26 0.022 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_214 0.024 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_8 0.032 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_13 0.021 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_8 0.021 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_58 0.025 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_18 0.02 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_59 0.027 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_236 0.024 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_59 0.022 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_111 0.027 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_145 0.026 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0125 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_181 0.024 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_264 0.03 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_326 0.027 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_28 0.029 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_104 0.033 Orthogroups_2024-Update Compare
Sequences (106) (download table)

InterPro Domains

GO Terms

Family Terms